Sodium in PDB 3ver: Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate

The structure of Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate, PDB code: 3ver was solved by C.Parthier, M.T.Stubbs, S.Goerlich, F.Jaenecke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.49 / 2.34
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	99.262, 99.262, 281.323, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 22.4

The structure of Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Sodium atom in the Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate (pdb code 3ver). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate, PDB code: 3ver:

Sodium binding site 1 out of 1 in the Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the O-Carbamoyltransferase Tobz in Complex with Carbamoyl Adenylate Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:34.0 occ:1.00 O A:VAL327 2.7 41.8 1.0 O A:ARG324 2.9 36.6 1.0 O A:LEU322 2.9 35.8 1.0 O A:HOH944 3.2 58.2 1.0 C A:THR323 3.6 49.4 1.0 O A:THR323 3.7 52.2 1.0 C A:ARG324 3.7 31.7 1.0 N A:ARG324 3.8 45.1 1.0 C A:VAL327 3.9 33.6 1.0 CA A:THR323 3.9 42.9 1.0 C A:LEU322 3.9 33.8 1.0 N A:THR323 4.4 34.2 1.0 CA A:ARG324 4.4 34.5 1.0 N A:SER325 4.6 33.1 1.0 CA A:VAL327 4.7 37.3 1.0 N A:VAL327 4.7 44.4 1.0 CB A:VAL327 4.7 39.3 1.0 CA A:SER325 4.8 44.9 1.0 N A:ASP328 4.9 38.8 1.0 CA A:ASP328 4.9 38.7 1.0

C.Parthier, S.Gorlich, F.Jaenecke, C.Breithaupt, U.Brauer, U.Fandrich, D.Clausnitzer, U.F.Wehmeier, C.Bottcher, D.Scheel, M.T.Stubbs. The O-Carbamoyltransferase Tobz Catalyzes An Ancient Enzymatic Reaction. Angew.Chem.Int.Ed.Engl. V. 51 4046 2012.
ISSN: ISSN 1433-7851
PubMed: 22383337
DOI: 10.1002/ANIE.201108896