Sodium in PDB 3ve2: The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis

The structure of The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis, PDB code: 3ve2 was solved by C.Calmettes, T.F.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.38 / 2.14
Space group	P 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	46.604, 149.336, 199.600, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 20.9

The binding sites of Sodium atom in the The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis (pdb code 3ve2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis, PDB code: 3ve2:

Sodium binding site 1 out of 1 in the The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The 2.1 Angstrom Crystal Structure of Transferrin Binding Protein B (Tbpb) From Serogroup B M982 Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na712 b:27.8 occ:1.00 O B:HOH941 2.9 35.1 1.0 O B:HOH975 3.1 58.4 1.0 N B:TYR41 3.2 31.5 1.0 N B:GLY72 3.3 27.4 1.0 CA B:GLY72 3.5 26.3 1.0 CB B:TYR41 3.7 35.7 1.0 CA B:TYR41 3.9 38.5 1.0 N B:GLY42 3.9 31.2 1.0 CD2 B:TYR41 4.0 32.4 1.0 CE B:MET412 4.0 66.1 1.0 CB B:ALA70 4.0 22.7 1.0 CA B:GLY40 4.1 38.1 1.0 C B:GLY40 4.1 39.6 1.0 C B:GLY72 4.1 31.8 1.0 O B:GLY42 4.2 27.7 1.0 N B:THR71 4.2 28.8 1.0 CG B:TYR41 4.3 37.3 1.0 SD B:MET412 4.4 0.7 1.0 C B:TYR41 4.4 39.5 1.0 O B:GLY72 4.5 30.2 1.0 O B:HOH1117 4.5 45.6 1.0 C B:THR71 4.5 30.3 1.0 CA B:ALA70 4.6 32.0 1.0 C B:ALA70 4.7 28.5 1.0 OG1 B:THR71 4.8 21.6 1.0 N B:LEU73 4.8 33.7 1.0 CA B:THR71 4.9 21.4 1.0 CA B:GLY42 5.0 25.4 1.0

C.Calmettes, J.Alcantara, R.H.Yu, A.B.Schryvers, T.F.Moraes. The Structural Basis of Transferrin Sequestration By Transferrin-Binding Protein B. Nat.Struct.Mol.Biol. V. 19 358 2012.
ISSN: ISSN 1545-9993
PubMed: 22343719
DOI: 10.1038/NSMB.2251