Sodium in PDB 3vdg: Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate

The structure of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate, PDB code: 3vdg was solved by Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	94.949, 94.949, 259.752, 90.00, 90.00, 120.00
R / Rfree (%)	15.9 / 18.6

The structure of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate (pdb code 3vdg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate, PDB code: 3vdg:

Sodium binding site 1 out of 1 in the Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Enolase MSMEG_6132 (Target Efi-502282) From Mycobacterium Smegmatis Str. MC2 155 Complexed with Formate and Acetate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:43.0 occ:1.00 OD1 A:ASN270 2.2 36.3 1.0 OE2 A:GLU247 2.2 28.9 1.0 O A:HOH767 2.3 32.5 1.0 O A:HOH603 2.4 25.4 1.0 OD2 A:ASP222 2.4 23.5 1.0 CG A:ASN270 3.2 31.3 1.0 CG A:ASP222 3.2 27.2 1.0 NZ A:LYS192 3.2 29.7 1.0 CD A:GLU247 3.4 33.5 1.0 ND2 A:ASN270 3.5 28.4 1.0 O1 A:FMT501 3.6 40.4 1.0 OD1 A:ASP222 3.7 24.8 1.0 CB A:GLU247 4.2 20.3 1.0 OE1 A:GLU247 4.2 63.5 1.0 CD2 A:LEU292 4.2 32.6 1.0 CB A:ASP222 4.2 21.9 1.0 CE A:LYS192 4.2 29.7 1.0 NZ A:LYS194 4.3 21.6 1.0 OD2 A:ASP248 4.3 21.7 1.0 CD2 A:HIS321 4.4 27.9 1.0 CG A:GLU247 4.4 41.3 1.0 CB A:ASN270 4.5 18.6 1.0 O A:HOH707 4.7 38.7 1.0 C A:FMT501 4.7 47.0 1.0 ND2 A:ASN224 4.8 22.8 1.0 N A:ASN270 4.9 21.5 1.0 OH A:TYR150 5.0 30.5 1.0

Y.Patskovsky, R.Toro, R.Bhosle, B.Hillerich, R.D.Seidel, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, W.D.Zencheck, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase MSMEG_6132 From Mycobacterium Smegmatis To Be Published.