Sodium in PDB 3uoy: Crystal Structure of Otemo Complex with Fad and Nadp (Form 1)

The structure of Crystal Structure of Otemo Complex with Fad and Nadp (Form 1), PDB code: 3uoy was solved by R.Shi, A.Matte, M.Cygler, P.Lau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.11 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.753, 94.994, 93.089, 90.00, 102.25, 90.00
R / Rfree (%)	19.6 / 24.5

The binding sites of Sodium atom in the Crystal Structure of Otemo Complex with Fad and Nadp (Form 1) (pdb code 3uoy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Otemo Complex with Fad and Nadp (Form 1), PDB code: 3uoy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Otemo Complex with Fad and Nadp (Form 1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Otemo Complex with Fad and Nadp (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na546 b:23.7 occ:1.00 O A:ARG350 2.5 26.6 1.0 O A:VAL353 2.8 27.6 1.0 O A:TYR348 2.9 26.4 1.0 C A:ARG350 3.7 26.5 1.0 C A:TYR348 3.9 26.4 1.0 C A:VAL353 3.9 27.3 1.0 C A:ASN349 4.3 26.2 1.0 N A:ARG350 4.4 26.0 1.0 O A:ASP351 4.4 28.3 1.0 O A:ASN349 4.5 26.6 1.0 N A:VAL353 4.5 27.8 1.0 CA A:ASP351 4.5 27.6 1.0 N A:ASP351 4.5 26.7 1.0 C A:ASP351 4.6 27.7 1.0 CA A:VAL353 4.6 27.4 1.0 O A:HOH762 4.7 27.2 1.0 CA A:ARG350 4.7 26.3 1.0 CA A:ASN349 4.7 26.1 1.0 N A:ASN349 4.7 26.2 1.0 CB A:VAL353 4.7 26.9 1.0 CA A:TYR348 4.8 26.3 1.0 CD2 A:HIS354 5.0 27.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Otemo Complex with Fad and Nadp (Form 1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Otemo Complex with Fad and Nadp (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na546 b:12.1 occ:1.00 O B:ARG350 2.7 14.6 1.0 O B:HOH655 2.7 36.5 1.0 O B:TYR348 2.7 13.4 1.0 O B:VAL353 2.8 13.8 1.0 C B:ARG350 3.8 15.6 1.0 C B:TYR348 3.9 14.2 1.0 C B:VAL353 4.0 14.1 1.0 O B:HOH753 4.0 35.1 1.0 O B:HOH841 4.3 24.7 1.0 C B:ASN349 4.4 15.0 1.0 N B:ARG350 4.5 14.8 1.0 N B:VAL353 4.5 15.0 1.0 N B:ASP351 4.5 15.6 1.0 CA B:ASP351 4.5 17.4 1.0 O B:ASP351 4.6 18.2 1.0 O B:ASN349 4.6 15.1 1.0 C B:ASP351 4.6 17.6 1.0 CA B:ASN349 4.7 14.3 1.0 CA B:VAL353 4.7 13.7 1.0 N B:ASN349 4.7 14.0 1.0 CA B:TYR348 4.7 14.5 1.0 O B:HOH781 4.7 20.1 1.0 CA B:ARG350 4.8 15.2 1.0 CB B:VAL353 4.9 12.7 1.0 O B:HOH720 4.9 35.0 1.0

H.Leisch, R.Shi, S.Grosse, K.Morley, H.Bergeron, M.Cygler, H.Iwaki, Y.Hasegawa, P.C.Lau. Cloning, Baeyer-Villiger Biooxidations, and Structures of the Camphor Pathway 2-Oxo-{Delta}(3)-4,5,5-Trimethylcyclopentenylacetyl-Coenzyme A Monooxygenase of Pseudomonas Putida Atcc 17453. Appl.Environ.Microbiol. V. 78 2200 2012.
ISSN: ISSN 0099-2240
PubMed: 22267661
DOI: 10.1128/AEM.07694-11