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Sodium in PDB 3u0s: Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6

Enzymatic activity of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6

All present enzymatic activity of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6:
3.1.8.2;

Protein crystallography data

The structure of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6, PDB code: 3u0s was solved by J.B.Bale, B.W.Shen, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.15 / 2.60
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 87.002, 87.002, 163.330, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 (pdb code 3u0s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6, PDB code: 3u0s:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 3u0s

Go back to Sodium Binding Sites List in 3u0s
Sodium binding site 1 out of 2 in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na342

b:0.1
occ:1.00
O1 B:SO4344 2.4 0.3 1.0
S B:SO4344 3.6 0.3 1.0
O3 B:SO4344 4.0 0.0 1.0
O4 B:SO4344 4.1 1.0 1.0
O2 B:SO4344 4.8 1.0 1.0

Sodium binding site 2 out of 2 in 3u0s

Go back to Sodium Binding Sites List in 3u0s
Sodium binding site 2 out of 2 in the Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Enzyme Redesigned Through Multiplayer Online Gaming: CE6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na343

b:0.4
occ:1.00
O2 B:SO4344 2.1 1.0 1.0
S B:SO4344 3.3 0.3 1.0
OH B:TYR82 3.4 44.8 1.0
O4 B:SO4344 3.5 1.0 1.0
CB B:PRO154 3.6 42.7 1.0
O1 B:SO4344 3.8 0.3 1.0
CE2 B:TYR82 4.0 43.3 1.0
CZ B:TYR82 4.2 44.4 1.0
CG B:PRO154 4.2 42.3 1.0
O3 B:SO4344 4.5 0.0 1.0
CA B:PRO154 4.9 41.8 1.0

Reference:

C.B.Eiben, J.B.Siegel, J.B.Bale, S.Cooper, F.Khatib, B.W.Shen, F.Players, B.L.Stoddard, Z.Popovic, D.Baker. Increased Diels-Alderase Activity Through Backbone Remodeling Guided By Foldit Players. Nat.Biotechnol. V. 30 190 2012.
ISSN: ISSN 1087-0156
PubMed: 22267011
DOI: 10.1038/NBT.2109
Page generated: Mon Oct 7 13:24:52 2024

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