Sodium in PDB 3u0b: Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis

The structure of Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis, PDB code: 3u0b was solved by T.L.Arakaki, B.L.Staker, M.C.Clifton, J.Abendroth, Seattle Structuralgenomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.31 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.730, 58.220, 76.880, 90.00, 127.82, 90.00
R / Rfree (%)	13.7 / 16.2

The binding sites of Sodium atom in the Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis (pdb code 3u0b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis, PDB code: 3u0b:

Sodium binding site 1 out of 1 in the Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Oxidoreductase From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na451 b:23.1 occ:1.00 O A:ALA61 2.2 14.1 1.0 O A:TYR64 2.4 14.8 1.0 O A:HOH846 2.5 15.6 0.5 O A:HOH806 2.5 10.5 0.5 O A:HOH558 2.6 19.4 1.0 C A:ALA61 3.4 14.1 1.0 C A:TYR64 3.5 14.1 1.0 O A:HOH847 3.7 9.9 0.5 CA A:ASN65 3.9 14.8 1.0 CA A:ALA61 4.0 13.4 1.0 N A:LEU66 4.0 14.3 1.0 N A:ASN65 4.2 13.8 1.0 O A:HOH963 4.4 25.7 1.0 N A:ASP62 4.4 14.3 1.0 CG A:LEU66 4.5 14.5 1.0 CB A:ALA61 4.5 13.9 1.0 C A:ASN65 4.5 14.2 1.0 N A:TYR64 4.5 13.5 1.0 OD1 A:ASN65 4.6 25.6 1.0 O A:HOH886 4.6 22.5 1.0 C A:ASP62 4.6 14.4 1.0 O A:ASP62 4.7 15.4 1.0 CA A:TYR64 4.7 13.0 1.0 CA A:ASP62 4.7 15.5 1.0 CB A:LEU66 4.9 14.9 1.0 O A:LEU60 4.9 12.5 1.0

L.Baugh, I.Phan, D.W.Begley, M.C.Clifton, B.Armour, D.M.Dranow, B.M.Taylor, M.M.Muruthi, J.Abendroth, J.W.Fairman, D.Fox, S.H.Dieterich, B.L.Staker, A.S.Gardberg, R.Choi, S.N.Hewitt, A.J.Napuli, J.Myers, L.K.Barrett, Y.Zhang, M.Ferrell, E.Mundt, K.Thompkins, N.Tran, S.Lyons-Abbott, A.Abramov, A.Sekar, D.Serbzhinskiy, D.Lorimer, G.W.Buchko, R.Stacy, L.J.Stewart, T.E.Edwards, W.C.Van Voorhis, P.J.Myler. Increasing the Structural Coverage of Tuberculosis Drug Targets. Tuberculosis (Edinb) V. 95 142 2015.
ISSN: ISSN 1472-9792
PubMed: 25613812
DOI: 10.1016/J.TUBE.2014.12.003