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Sodium in PDB 3shx: Frog M-Ferritin with Magnesium, L134P Mutant

Enzymatic activity of Frog M-Ferritin with Magnesium, L134P Mutant

All present enzymatic activity of Frog M-Ferritin with Magnesium, L134P Mutant:
1.16.3.1;

Protein crystallography data

The structure of Frog M-Ferritin with Magnesium, L134P Mutant, PDB code: 3shx was solved by T.Tosha, H.L.Ng, T.Alber, E.C.Theil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.38 / 1.35
Space group F 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 183.775, 183.775, 183.775, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 16.3

Other elements in 3shx:

The structure of Frog M-Ferritin with Magnesium, L134P Mutant also contains other interesting chemical elements:

Magnesium (Mg) 10 atoms
Chlorine (Cl) 7 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Frog M-Ferritin with Magnesium, L134P Mutant (pdb code 3shx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Frog M-Ferritin with Magnesium, L134P Mutant, PDB code: 3shx:

Sodium binding site 1 out of 1 in 3shx

Go back to Sodium Binding Sites List in 3shx
Sodium binding site 1 out of 1 in the Frog M-Ferritin with Magnesium, L134P Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Frog M-Ferritin with Magnesium, L134P Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na193

b:24.5
occ:0.16
O A:HOH350 2.4 25.5 1.0
OE1 A:GLU130 2.5 38.5 1.0
MG A:MG184 2.8 22.7 0.3
CD A:GLU130 3.4 26.1 1.0
OE2 A:GLU130 3.5 25.4 1.0
O A:HOH373 3.6 30.2 1.0
O A:HOH393 4.3 27.9 1.0
O A:HOH451 4.4 25.6 1.0
MG A:MG192 4.6 23.0 0.2
CG A:GLU130 4.8 27.9 1.0

Reference:

T.Tosha, H.L.Ng, T.Alber, E.C.Theil. Frog M-Ferritin with Magnesium, L134P Mutant To Be Published.
Page generated: Mon Oct 7 12:56:36 2024

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