Sodium in PDB 3s3z: Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10

The structure of Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10, PDB code: 3s3z was solved by J.R.Keeffe, P.J.Bjorkman, S.L.Mayo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.81 / 1.75
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	47.990, 47.990, 79.318, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 21.2

The binding sites of Sodium atom in the Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10 (pdb code 3s3z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10, PDB code: 3s3z:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na213 b:11.1 occ:0.50 O A:HOH229 2.8 17.0 1.0 N A:THR31 3.3 14.8 1.0 OD1 A:ASN30 3.6 16.5 1.0 O A:THR31 3.7 16.2 1.0 CB A:THR31 3.8 15.8 1.0 O A:HOH235 3.8 21.3 1.0 O A:HOH248 3.8 22.7 1.0 O A:HOH282 3.9 26.2 1.0 CA A:THR31 4.0 15.2 1.0 OG1 A:THR31 4.1 16.5 1.0 C A:THR31 4.3 15.7 1.0 C A:ASN30 4.4 14.9 1.0 CA A:ASN30 4.4 16.0 1.0 CG A:ASN30 4.4 17.5 1.0

Sodium binding site 2 out of 2 in the Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure An Tandem Cyanovirin-N Dimer, CVN2L10 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na214 b:35.0 occ:1.00 CG2 A:ILE94 3.4 16.1 0.5 CG2 A:ILE94 3.7 17.1 0.5 O A:HOH225 4.6 22.6 1.0 CB A:ASP95 4.7 18.9 1.0 CB A:ILE94 4.9 16.1 0.5

J.R.Keeffe, P.N.Gnanapragasam, S.K.Gillespie, J.Yong, P.J.Bjorkman, S.L.Mayo. Designed Oligomers of Cyanovirin-N Show Enhanced Hiv Neutralization. Proc.Natl.Acad.Sci.Usa V. 108 14079 2011.
ISSN: ISSN 0027-8424
PubMed: 21799112
DOI: 10.1073/PNAS.1108777108