Atomistry » Sodium » PDB 3q11-3qpz » 3qpy
Atomistry »
  Sodium »
    PDB 3q11-3qpz »
      3qpy »

Sodium in PDB 3qpy: Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

Enzymatic activity of Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis

All present enzymatic activity of Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis:
2.5.1.55;

Protein crystallography data

The structure of Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 3qpy was solved by T.M.Allison, G.B.Jameson, E.J.Parker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.84 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.428, 86.183, 163.312, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 25.2

Other elements in 3qpy:

The structure of Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis (pdb code 3qpy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis, PDB code: 3qpy:

Sodium binding site 1 out of 1 in 3qpy

Go back to Sodium Binding Sites List in 3qpy
Sodium binding site 1 out of 1 in the Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Mutant (K57A) of 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase (KDO8PS) From Neisseria Meningitidis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na281

b:26.9
occ:1.00
 O B:HOH287 2.1 35.7 1.0
O B:HOH348 2.2 36.1 1.0
O B:THR128 2.3 26.4 1.0
O B:HOH518 2.6 43.6 1.0
C B:THR128 3.5 27.0 1.0
OD1 B:ASN130 3.9 31.6 1.0
O B:HOH364 4.0 40.8 1.0
O B:HOH748 4.1 51.0 1.0
O B:HOH732 4.1 46.5 1.0
N B:GLY129 4.4 29.8 1.0
CA B:GLY129 4.5 29.6 1.0
CA B:THR128 4.5 29.0 1.0
O B:HOH452 4.6 41.8 1.0
O B:HOH332 4.7 36.2 1.0
C B:GLY129 4.7 29.4 1.0
N B:ASN130 5.0 26.7 1.0

Reference:

T.M.Allison, R.D.Hutton, F.C.Cochrane, J.A.Yeoman, G.B.Jameson, E.J.Parker. Targeting the Role of A Key Conserved Motif For Substrate Selection and Catalysis By 3-Deoxy-D-Manno-Octulosonate 8-Phosphate Synthase Biochemistry V. 50 3686 2011.
ISSN: ISSN 0006-2960
PubMed: 21438567
DOI: 10.1021/BI200251F
Page generated: Mon Oct 7 12:36:07 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy