Atomistry » Sodium » PDB 3pkk-3pzs » 3pyx
Atomistry »
  Sodium »
    PDB 3pkk-3pzs »
      3pyx »

Sodium in PDB 3pyx: Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate

Enzymatic activity of Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate

All present enzymatic activity of Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate:
1.2.1.11;

Protein crystallography data

The structure of Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate, PDB code: 3pyx was solved by A.G.Pavlovsky, R.E.Viola, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.33 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.099, 99.280, 64.540, 90.00, 101.02, 90.00
R / Rfree (%) 16 / 18.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate (pdb code 3pyx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate, PDB code: 3pyx:

Sodium binding site 1 out of 1 in 3pyx

Go back to Sodium Binding Sites List in 3pyx
Sodium binding site 1 out of 1 in the Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystals Structure of Aspartate Beta-Semialdehyde Dehydrogenase Complex with Nadp and 2-Aminoterephthalate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na368

b:19.5
occ:1.00
 O A:ALA279 2.3 15.9 1.0
O A:ALA274 2.4 19.9 1.0
O A:PHE276 2.4 14.9 1.0
C A:PHE276 3.3 15.2 1.0
C A:ALA274 3.3 18.6 1.0
N A:PHE276 3.4 16.2 1.0
C A:ALA279 3.5 15.4 1.0
O A:ILE273 3.7 16.7 1.0
C A:ALA275 3.8 16.8 1.0
O A:HOH592 3.8 29.3 1.0
CA A:PHE276 4.0 15.5 1.0
N A:ALA279 4.1 14.5 1.0
N A:ALA275 4.1 18.2 1.0
N A:PRO277 4.2 15.7 1.0
CA A:ALA274 4.2 18.5 1.0
CA A:ALA275 4.2 17.6 1.0
CA A:ALA279 4.2 14.9 1.0
CA A:PRO277 4.4 15.4 1.0
O A:ALA275 4.4 16.8 1.0
CB A:ALA279 4.5 15.1 1.0
N A:VAL280 4.6 14.7 1.0
N A:GLY278 4.6 15.2 1.0
C A:PRO277 4.7 15.9 1.0
C A:ILE273 4.7 16.1 1.0
O A:HOH525 4.8 27.6 1.0
CA A:VAL280 4.8 15.4 1.0
CB A:PHE276 4.8 15.5 1.0
N A:ALA274 5.0 17.4 1.0

Reference:

A.G.Pavlovsky, X.Liu, C.R.Faehnle, N.Potente, R.E.Viola. Structural Characterization of Inhibitors with Selectivity Against Members of A Homologous Enzyme Family. Chem.Biol.Drug Des. V. 79 128 2012.
ISSN: ISSN 1747-0277
PubMed: 22039970
DOI: 10.1111/J.1747-0285.2011.01267.X
Page generated: Mon Oct 7 12:24:16 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy