Atomistry » Sodium » PDB 3pkk-3pzs » 3pks
Atomistry »
  Sodium »
    PDB 3pkk-3pzs »
      3pks »

Sodium in PDB 3pks: Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide

Enzymatic activity of Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide

All present enzymatic activity of Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide, PDB code: 3pks was solved by G.Marassio, N.Colloc'h, T.Prange, J.H.Abraini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.98 / 1.75
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 80.219, 96.255, 105.500, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 19.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide (pdb code 3pks). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide, PDB code: 3pks:

Sodium binding site 1 out of 1 in 3pks

Go back to Sodium Binding Sites List in 3pks
Sodium binding site 1 out of 1 in the Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Urate Oxidase Under 1.5 Mpa / 15 Bars Pressure of Nitrous Oxide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:27.7
occ:1.00
O A:HOH558 2.3 41.1 1.0
O A:ILE88 2.4 24.2 1.0
O A:ILE94 2.4 20.6 1.0
O A:TYR91 2.6 22.7 1.0
OE1 A:GLU136 2.7 35.6 1.0
O A:ASN92 3.3 27.7 1.0
C A:ILE88 3.4 23.2 1.0
C A:ILE94 3.6 19.9 1.0
CD A:GLU136 3.6 36.9 1.0
C A:TYR91 3.6 23.7 1.0
C A:ASN92 3.7 26.0 1.0
CA A:ILE88 3.7 22.4 1.0
CA A:ASN92 3.9 27.1 1.0
OE2 A:GLU136 3.9 40.4 1.0
ND1 A:HIS95 4.0 26.9 1.0
N A:ILE94 4.1 20.8 1.0
CB A:ILE88 4.1 23.0 1.0
N A:ASN92 4.2 24.9 1.0
CA A:ILE94 4.4 19.9 1.0
CE1 A:HIS95 4.4 27.8 1.0
N A:HIS93 4.5 24.8 1.0
N A:HIS95 4.5 19.5 1.0
N A:GLU89 4.6 23.5 1.0
CA A:HIS95 4.6 19.8 1.0
O A:PHE87 4.7 20.2 1.0
CB A:ILE94 4.8 20.1 1.0
CA A:TYR91 4.8 23.4 1.0
CG A:GLU136 4.8 32.7 1.0
N A:TYR91 4.9 23.4 1.0
C A:HIS93 4.9 22.4 1.0
CG2 A:ILE88 4.9 23.7 1.0
CG A:HIS95 5.0 23.3 1.0

Reference:

G.Marassio, T.Prange, H.N.David, J.Sopkova-De Oliveira Santos, L.Gabison, N.Delcroix, J.H.Abraini, N.Colloc'h. Pressure-Response Analysis of Anesthetic Gases Xenon and Nitrous Oxide on Urate Oxidase: A Crystallographic Study. Faseb J. V. 25 2266 2011.
ISSN: ISSN 0892-6638
PubMed: 21421845
DOI: 10.1096/FJ.11-183046
Page generated: Mon Oct 7 12:20:03 2024

Last articles

Al in 8GJ3
Al in 8IEN
Al in 7YLY
Al in 8GJ2
Al in 8GJ0
Al in 8EFF
Al in 8FW5
Al in 8DFD
Al in 8EEW
Al in 8DFC
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy