Sodium in PDB 3pbj: Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein

The structure of Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein, PDB code: 3pbj was solved by M.L.Zastrow, A.F.A.Peacock, J.A.Stuckey, V.L.Pecoraro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.98 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	25.877, 38.649, 75.659, 90.00, 95.06, 90.00
R / Rfree (%)	20.5 / 26.4

The structure of Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein also contains other interesting chemical elements:

Mercury	(Hg)	2 atoms
Zinc	(Zn)	7 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein (pdb code 3pbj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein, PDB code: 3pbj:

Sodium binding site 1 out of 1 in the Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na32 b:80.8 occ:1.00 CL E:CL33 2.5 78.7 1.0 CB B:GLU27 2.7 80.2 1.0 CA B:GLU27 4.2 79.6 1.0 O E:GLU24 4.3 94.3 0.7 O B:HIS23 4.4 60.5 1.0 CA B:GLU24 4.7 62.7 1.0 O E:HOH34 4.7 58.7 1.0 CB E:HIS28 4.8 95.9 1.0 N B:GLU27 4.9 78.5 1.0 O B:GLU24 5.0 69.4 1.0

M.L.Zastrow, A.F.Peacock, J.A.Stuckey, V.L.Pecoraro. Hydrolytic Catalysis and Structural Stabilization in A Designed Metalloprotein. Nat Chem V. 4 118 2012.
ISSN: ESSN 1755-4349
PubMed: 22270627
DOI: 10.1038/NCHEM.1201