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Sodium in PDB 3p3q: Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M

Protein crystallography data

The structure of Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M, PDB code: 3p3q was solved by A.P.Kuzin, S.M.Vorobiev, M.Abashidze, J.Seetharaman, J.Janjua, R.Xiao, E.L.Foote, C.Ciccosanti, H.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.25 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.231, 76.156, 160.281, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 25.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M (pdb code 3p3q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M, PDB code: 3p3q:

Sodium binding site 1 out of 1 in 3p3q

Go back to Sodium Binding Sites List in 3p3q
Sodium binding site 1 out of 1 in the Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mmoq Response Regulator From Methylococcus Capsulatus Str. Bath at the Resolution 2.4A, Northeast Structural Genomics Consortium Target MCR175M within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na311

b:52.6
occ:1.00
OD1 A:ASP112 2.9 55.4 1.0
O2 A:SO43 3.1 0.5 1.0
O3 A:SO43 3.2 0.3 1.0
S A:SO43 3.4 0.6 1.0
O B:HOH325 3.4 29.9 1.0
O1 A:SO43 3.5 0.8 1.0
CG A:ASP112 3.7 64.1 1.0
CB A:ASP112 3.8 63.0 1.0
O B:ASP209 4.2 21.7 1.0
CZ B:ARG73 4.4 49.0 1.0
NH2 B:ARG73 4.5 51.8 1.0
CG B:ARG73 4.5 28.7 1.0
OD2 B:ASP209 4.5 38.1 1.0
OD1 B:ASP209 4.6 34.0 1.0
CB B:ALA77 4.6 19.5 1.0
NE B:ARG73 4.6 36.8 1.0
CD B:PRO78 4.7 32.2 1.0
NH1 B:ARG73 4.7 57.4 1.0
NH1 A:ARG118 4.8 72.2 1.0
OD2 A:ASP112 4.8 60.4 1.0
CA B:ALA77 4.8 24.8 1.0
O B:ARG73 4.8 19.5 1.0
CG B:ASP209 4.9 30.0 1.0
O4 A:SO43 4.9 0.5 1.0

Reference:

A.P.Kuzin, S.M.Vorobiev, M.Abashidze, J.Seetharaman, J.Janjua, R.Xiao, E.L.Foote, C.Ciccosanti, H.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target MCR175M To Be Published.
Page generated: Mon Oct 7 12:11:25 2024

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