Sodium in PDB 3nrb: Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution

The structure of Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution, PDB code: 3nrb was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.96 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	82.452, 118.245, 129.193, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 24

The binding sites of Sodium atom in the Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution (pdb code 3nrb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution, PDB code: 3nrb:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na287 b:30.4 occ:1.00 O A:HOH564 2.2 38.0 1.0 O A:ARG244 2.2 23.1 1.0 O A:HOH375 2.2 27.7 1.0 O A:HOH524 2.5 36.4 1.0 OD2 A:ASP249 2.6 16.8 1.0 O C:HOH307 2.6 18.7 1.0 C A:ARG244 3.3 22.5 1.0 CG A:ASP249 3.5 20.6 1.0 O A:HOH390 3.6 31.4 1.0 O C:HOH603 3.7 39.2 1.0 CA A:ASP245 3.9 23.5 1.0 OD1 A:ASP249 3.9 22.3 1.0 N A:ASP245 4.1 22.4 1.0 O C:HOH305 4.2 28.4 1.0 CB A:ARG244 4.2 26.1 1.0 CA A:ARG244 4.2 23.1 1.0 N A:SER246 4.3 20.7 1.0 O A:HOH533 4.3 36.7 1.0 OD1 A:ASP245 4.6 22.4 1.0 C A:ASP245 4.6 24.1 1.0 CB A:ASP249 4.6 19.1 1.0 OXT C:ASP286 4.9 27.6 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na287 b:49.5 occ:1.00 O C:HOH322 2.3 28.9 1.0 O C:LYS96 2.3 29.7 1.0 O C:ALA128 2.3 29.1 1.0 O C:HOH573 2.5 38.3 1.0 C C:ALA128 3.2 28.1 1.0 C C:LYS96 3.3 27.1 1.0 OD1 C:ASP98 3.6 33.6 1.0 CA C:LEU129 3.6 31.0 1.0 N C:LEU129 3.8 28.6 1.0 CA C:LYS96 3.9 23.9 1.0 CG C:ASP98 4.0 21.2 1.0 N C:SER130 4.1 31.8 1.0 CB C:ALA128 4.1 25.1 1.0 O C:HOH415 4.2 32.5 1.0 CA C:ALA128 4.2 26.8 1.0 CB C:ASP98 4.2 24.6 1.0 C C:LEU129 4.2 33.1 1.0 O C:SER95 4.3 25.1 1.0 N C:PHE97 4.5 23.7 1.0 OG C:SER130 4.5 40.8 1.0 N C:ASP98 4.5 22.4 1.0 CD2 C:LEU129 4.5 18.5 1.0 O C:HOH297 4.7 17.5 1.0 OD2 C:ASP98 4.8 23.5 1.0 CB C:LYS96 4.8 28.3 1.0 CB C:LEU129 4.8 30.4 1.0 CA C:PHE97 4.9 23.6 1.0 N C:LYS96 5.0 24.0 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Formyltetrahydrofolate Deformylase (Puru, PP_1943) From Pseudomonas Putida KT2440 at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na287 b:23.5 occ:1.00 O D:HOH371 2.3 27.1 1.0 O B:HOH451 2.3 33.5 1.0 OD2 D:ASP249 2.4 18.6 1.0 O D:HOH382 2.4 27.7 1.0 O D:ARG244 2.5 23.1 1.0 O D:HOH752 2.5 46.1 1.0 CG D:ASP249 3.3 21.1 1.0 C D:ARG244 3.5 22.5 1.0 OD1 D:ASP249 3.7 18.9 1.0 O B:HOH419 4.0 32.6 1.0 CA D:ASP245 4.1 22.0 1.0 N D:ASP245 4.2 22.1 1.0 O B:HOH346 4.2 24.2 1.0 O D:HOH607 4.2 39.5 1.0 N D:SER246 4.3 23.4 1.0 CB D:ARG244 4.4 23.6 1.0 CA D:ARG244 4.4 23.0 1.0 CB D:ASP249 4.5 16.0 1.0 OD1 D:ASP245 4.5 20.2 1.0 O D:HOH773 4.7 48.3 1.0 C D:ASP245 4.7 22.7 1.0 OXT B:ASP286 4.7 25.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.