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Sodium in PDB 3mga: 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium

Protein crystallography data

The structure of 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium, PDB code: 3mga was solved by G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.55 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 52.489, 125.552, 66.606, 90.00, 91.43, 90.00
R / Rfree (%) 18.9 / 24.5

Other elements in 3mga:

The structure of 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium (pdb code 3mga). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium, PDB code: 3mga:

Sodium binding site 1 out of 1 in 3mga

Go back to Sodium Binding Sites List in 3mga
Sodium binding site 1 out of 1 in the 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na406

b:52.5
occ:1.00
OG1 B:THR191 2.6 42.6 1.0
O B:PRO230 2.6 44.1 1.0
OG1 B:THR224 2.7 43.0 1.0
OH B:TYR234 2.8 27.6 1.0
CE2 B:TYR234 3.6 30.4 1.0
CB B:THR191 3.6 44.9 1.0
CZ B:TYR234 3.6 28.5 1.0
C B:PRO230 3.7 45.4 1.0
CB B:LEU229 3.8 41.0 1.0
N B:ALA232 3.8 39.5 1.0
CB B:THR224 3.9 43.9 1.0
CG2 B:THR191 3.9 40.5 1.0
CB B:ALA232 4.0 34.9 1.0
CG2 B:THR224 4.1 40.6 1.0
CD1 B:LEU229 4.2 28.9 1.0
CA B:GLY231 4.3 45.4 1.0
C B:GLY231 4.3 43.3 1.0
C B:LEU229 4.4 44.6 1.0
N B:GLY231 4.4 47.1 1.0
N B:PRO230 4.5 44.7 1.0
CA B:ALA232 4.5 37.6 1.0
O B:LEU220 4.5 43.1 1.0
O B:LEU229 4.6 45.8 1.0
CG B:LEU229 4.7 38.3 1.0
CA B:PRO230 4.7 46.1 1.0
CA B:LEU229 4.8 43.6 1.0
CA B:THR224 4.8 44.1 1.0
CD B:PRO230 4.8 43.9 1.0
CD2 B:TYR234 4.9 30.5 1.0
CE1 B:TYR234 4.9 32.0 1.0
CA B:THR191 5.0 46.0 1.0

Reference:

G.Minasov, Z.Wawrzak, T.Skarina, O.Onopriyenko, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.4 Angstrom Crystal Structure of Ferric Enterobactin Esterase (Fes) From Salmonella Typhimurium. To Be Published.
Page generated: Mon Oct 7 11:30:00 2024

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