Sodium in PDB 3lwd: Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution

Enzymatic activity of Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution

All present enzymatic activity of Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution:
3.1.1.31;

Protein crystallography data

The structure of Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution, PDB code: 3lwd was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	48.86 / 1.75
*Space group*	P 3₁ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	60.647, 60.647, 133.089, 90.00, 90.00, 120.00
*R / R_free (%)*	15.8 / 18.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution (pdb code 3lwd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution, PDB code: 3lwd:

Sodium binding site 1 out of 1 in 3lwd

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Sodium Binding Sites List in 3lwd

Sodium binding site 1 out of 1 in the Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative 6-Phosphogluconolactonase (YP_574786.1) From Chromohalobacter Salexigens Dsm 3043 at 1.88 A Resolution within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na228 b:35.6 occ:1.00	O	A:VAL166	2.2	15.6	1.0
	O	A:HOH374	2.3	21.7	1.0
	O	A:ALA163	2.4	15.8	1.0
	O	A:HOH335	2.4	20.6	1.0
	O	A:HOH288	2.6	13.3	1.0
	O	A:HOH377	2.7	18.6	1.0
	C	A:ALA163	3.4	15.6	1.0
	C	A:VAL166	3.5	16.5	1.0
	O	A:HOH300	3.8	18.6	1.0
	CA	A:PRO164	4.0	17.9	1.0
	N	A:ALA163	4.1	13.5	1.0
	O	A:PRO164	4.1	19.1	1.0
	N	A:PRO164	4.2	17.3	1.0
	C	A:PRO164	4.2	17.8	1.0
	N	A:VAL166	4.2	17.3	1.0
	O	A:HOH388	4.3	22.6	1.0
	N	A:PRO167	4.4	15.5	1.0
	CA	A:ALA163	4.4	14.9	1.0
	CA	A:VAL166	4.4	17.4	1.0
	CA	A:PRO167	4.4	15.0	1.0
	CG2	A:VAL166	4.4	18.1	1.0
	C	A:PRO167	4.5	13.7	1.0
	N	A:GLN168	4.6	13.5	1.0
	O	A:GLN168	4.7	12.1	1.0
	N	A:SER165	4.9	17.2	1.0
	O	A:HOH350	4.9	23.2	1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.

Page generated: Mon Oct 7 11:24:14 2024

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