Atomistry » Sodium » PDB 3iwf-3k93 » 3k2q
Atomistry »
  Sodium »
    PDB 3iwf-3k93 »
      3k2q »

Sodium in PDB 3k2q: Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88

Enzymatic activity of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88

All present enzymatic activity of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88:
2.7.1.90;

Protein crystallography data

The structure of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88, PDB code: 3k2q was solved by J.Seetharaman, S.Lew, D.Wang, H.Neely, K.Janjua, K.Cunningham, L.Owens, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structuralgenomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.70 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 151.526, 100.752, 101.584, 90.00, 110.34, 90.00
R / Rfree (%) 23.4 / 26

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88 (pdb code 3k2q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88, PDB code: 3k2q:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in 3k2q

Go back to Sodium Binding Sites List in 3k2q
Sodium binding site 1 out of 3 in the Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na421

b:6.7
occ:1.00
NH2 A:ARG80 2.4 48.2 1.0
O A:HOH438 2.9 33.4 1.0
CZ A:ARG80 3.3 48.2 1.0
NE A:ARG80 3.8 46.8 1.0
N A:GLY13 4.0 19.9 1.0
NZ A:LYS141 4.0 14.3 1.0
CA A:GLY12 4.0 20.0 1.0
NH1 A:ARG80 4.3 48.0 1.0
C A:GLY12 4.5 21.3 1.0

Sodium binding site 2 out of 3 in 3k2q

Go back to Sodium Binding Sites List in 3k2q
Sodium binding site 2 out of 3 in the Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na421

b:1.8
occ:1.00
NH2 B:ARG80 2.5 47.8 1.0
CZ B:ARG80 3.4 48.4 1.0
NE B:ARG80 3.8 47.2 1.0
CA B:GLY12 4.0 21.1 1.0
N B:GLY13 4.1 20.7 1.0
NZ B:LYS141 4.1 18.9 1.0
NH1 B:ARG80 4.3 48.4 1.0
O B:HOH492 4.4 23.9 1.0
C B:GLY12 4.6 21.2 1.0
O B:HOH527 4.8 26.3 1.0

Sodium binding site 3 out of 3 in 3k2q

Go back to Sodium Binding Sites List in 3k2q
Sodium binding site 3 out of 3 in the Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na421

b:8.8
occ:1.00
NH2 C:ARG80 2.5 46.1 1.0
O C:HOH526 2.7 42.9 1.0
CZ C:ARG80 3.4 47.1 1.0
O C:HOH434 3.6 44.6 1.0
NE C:ARG80 3.9 45.4 1.0
CA C:GLY12 4.2 20.8 1.0
N C:GLY13 4.2 21.8 1.0
NZ C:LYS141 4.2 15.4 1.0
NH1 C:ARG80 4.3 46.3 1.0
C C:GLY12 4.8 21.2 1.0

Reference:

J.Seetharaman, S.Lew, D.Wang, H.Neely, K.Janjua, K.Cunningham, L.Owens, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Crystal Structure of Pyrophosphate-Dependent Phosphofructokinase From Marinobacter Aquaeolei, Northeast Structural Genomics Consortium Target MQR88 To Be Published.
Page generated: Sun Aug 17 15:56:30 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy