Sodium in PDB 3iru: Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica

The structure of Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica, PDB code: 3iru was solved by C.Chang, E.Evdokimova, O.Kagan, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.30
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	152.280, 152.280, 61.821, 90.00, 90.00, 120.00
R / Rfree (%)	20.4 / 24.5

The binding sites of Sodium atom in the Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica (pdb code 3iru). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica, PDB code: 3iru:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:48.9 occ:1.00 O A:HOH334 2.3 26.5 1.0 O A:HOH333 2.4 35.4 1.0 O A:HOH335 2.4 34.6 1.0 O A:HOH332 2.4 29.3 1.0 O A:THR156 2.5 26.8 1.0 O A:HOH357 2.5 38.6 1.0 OG1 A:THR156 3.6 29.0 1.0 C A:THR156 3.6 26.1 1.0 N A:THR156 4.3 26.0 1.0 CA A:THR156 4.4 26.6 1.0 OE2 A:GLU178 4.5 36.7 1.0 OD2 A:ASP161 4.5 37.8 1.0 OE1 A:GLU178 4.5 37.7 1.0 CE2 A:PHE158 4.5 26.2 1.0 CB A:THR156 4.6 26.7 1.0 N A:VAL157 4.7 25.9 1.0 CD2 A:PHE158 4.8 24.2 1.0 O A:HOH311 4.8 27.3 1.0 CA A:VAL157 4.8 24.1 1.0 CD A:GLU178 5.0 35.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Phoshonoacetaldehyde Hydrolase Like Protein From Oleispira Antarctica within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:42.2 occ:1.00 O B:HOH371 2.2 40.3 1.0 O B:THR156 2.4 27.4 1.0 O B:HOH329 2.4 27.4 1.0 O B:HOH367 2.5 29.8 1.0 O B:HOH372 2.6 38.9 1.0 O B:HOH366 2.7 37.5 1.0 OG1 B:THR156 3.5 30.1 1.0 C B:THR156 3.5 27.0 1.0 OE2 B:GLU178 4.1 39.0 1.0 N B:THR156 4.1 27.6 1.0 CA B:THR156 4.2 27.8 1.0 OD2 B:ASP161 4.3 38.5 1.0 CE2 B:PHE158 4.4 25.8 1.0 CB B:THR156 4.4 27.9 1.0 O B:HOH330 4.4 31.5 1.0 O B:HOH350 4.5 15.3 1.0 N B:VAL157 4.6 26.4 1.0 CD2 B:PHE158 4.7 24.6 1.0 O B:HOH318 4.8 34.1 1.0 CA B:VAL157 4.8 25.2 1.0

M.Kube, T.N.Chernikova, Y.Al-Ramahi, A.Beloqui, N.Lopez-Cortez, M.E.Guazzaroni, H.J.Heipieper, S.Klages, O.R.Kotsyurbenko, I.Langer, T.Y.Nechitaylo, H.Lunsdorf, M.Fernandez, S.Juarez, S.Ciordia, A.Singer, O.Kagan, O.Egorova, P.A.Petit, P.Stogios, Y.Kim, A.Tchigvintsev, R.Flick, R.Denaro, M.Genovese, J.P.Albar, O.N.Reva, M.Martinez-Gomariz, H.Tran, M.Ferrer, A.Savchenko, A.F.Yakunin, M.M.Yakimov, O.V.Golyshina, R.Reinhardt, P.N.Golyshin. Genome Sequence and Functional Genomic Analysis of the Oil-Degrading Bacterium Oleispira Antarctica. Nat Commun V. 4 2156 2013.
ISSN: ESSN 2041-1723
PubMed: 23877221
DOI: 10.1038/NCOMMS3156