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Sodium in PDB 3iqf: Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin
Enzymatic activity of Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin
All present enzymatic activity of Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin:
1.5.99.9;
1.5.99.9;
Protein crystallography data
The structure of Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin, PDB code: 3iqf
was solved by
K.E.Ceh,
U.Demmer,
E.Warkentin,
J.Moll,
R.K.Thauer,
S.Shima,
U.Ermler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 112.50 / 2.10 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 103.400, 167.100, 122.500, 90.00, 113.60, 90.00 |
| R / Rfree (%) | 16 / 20 |
Other elements in 3iqf:
The structure of Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin also contains other interesting chemical elements:
| Calcium | (Ca) | 7 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin
(pdb code 3iqf). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin, PDB code: 3iqf:
In total only one binding site of Sodium was determined in the Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin, PDB code: 3iqf:
Sodium binding site 1 out of 1 in 3iqf
Go back to
Sodium Binding Sites List in 3iqf
Sodium binding site 1 out
of 1 in the Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Structure of F420 Dependent Methylene-Tetrahydromethanopterin Dehydrogenase in Complex with Methenyl-Tetrahydromethanopterin within 5.0Å range:
|
Reference:
K.Ceh,
U.Demmer,
E.Warkentin,
J.Moll,
R.K.Thauer,
S.Shima,
U.Ermler.
Structural Basis of the Hydride Transfer Mechanism in F(420)-Dependent Methylenetetrahydromethanopterin Dehydrogenase Biochemistry V. 48 10098 2009.
ISSN: ISSN 0006-2960
PubMed: 19761261
DOI: 10.1021/BI901104D
Page generated: Sun Aug 17 15:49:55 2025
ISSN: ISSN 0006-2960
PubMed: 19761261
DOI: 10.1021/BI901104D
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