Sodium in PDB 3hyi: Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima

The structure of Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima, PDB code: 3hyi was solved by B.K.Kaiser, M.C.Clifton, B.W.Shen, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.40 / 2.34
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.648, 61.303, 97.215, 90.00, 90.00, 90.00
R / Rfree (%)	22.8 / 27.6

The binding sites of Sodium atom in the Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima (pdb code 3hyi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima, PDB code: 3hyi:

Sodium binding site 1 out of 1 in the Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Full-Length DUF199/Whia From Thermatoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Na297 b:38.5 occ:1.00 ND2 A:ASN258 3.1 23.6 1.0 CG A:ASN258 4.1 24.5 1.0 CB A:ARG257 4.2 25.3 1.0 OD1 A:ASN258 4.3 24.6 1.0 CD A:ARG257 4.3 25.7 1.0 CG2 A:VAL254 4.4 27.5 1.0 CD A:LYS269 4.6 24.2 1.0 CA A:VAL254 4.6 27.4 1.0 CG A:ARG257 4.9 25.4 1.0 NZ A:LYS269 4.9 24.5 1.0 CB A:VAL254 4.9 27.5 1.0

B.K.Kaiser, M.C.Clifton, B.W.Shen, B.L.Stoddard. The Structure of A Bacterial DUF199/Whia Protein: Domestication of An Invasive Endonuclease Structure V. 17 1368 2009.
ISSN: ISSN 0969-2126
PubMed: 19836336
DOI: 10.1016/J.STR.2009.08.008