Sodium in PDB 3h4z: Crystal Structure of An Mbp-Der P 7 Fusion Protein

The structure of Crystal Structure of An Mbp-Der P 7 Fusion Protein, PDB code: 3h4z was solved by L.C.Pedersen, G.A.Mueller, R.E.London, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.91 / 2.35
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	193.352, 117.904, 92.441, 90.00, 114.06, 90.00
R / Rfree (%)	24.9 / 29.3

The binding sites of Sodium atom in the Crystal Structure of An Mbp-Der P 7 Fusion Protein (pdb code 3h4z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Mbp-Der P 7 Fusion Protein, PDB code: 3h4z:

Sodium binding site 1 out of 1 in the Crystal Structure of An Mbp-Der P 7 Fusion Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Mbp-Der P 7 Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1216 b:46.5 occ:1.00 ND2 A:ASN18 2.9 38.2 1.0 OD1 A:ASP296 3.8 37.3 1.0 CZ A:TYR17 4.0 28.7 1.0 CG A:ASN18 4.0 33.1 1.0 OH A:TYR17 4.1 30.1 1.0 O B:HOH1293 4.1 36.9 1.0 OD2 A:ASP296 4.2 34.5 1.0 CE2 A:TYR17 4.3 28.5 1.0 NZ A:LYS297 4.3 33.5 1.0 CE1 A:TYR17 4.4 29.1 1.0 CG A:ASP296 4.4 33.6 1.0 O B:HOH1249 4.5 32.0 1.0 CB A:ASN18 4.6 31.8 1.0 CD2 A:TYR17 4.9 28.6 1.0 O A:HOH1244 4.9 28.0 1.0 OD1 A:ASN18 4.9 32.1 1.0 CE A:LYS297 5.0 34.8 1.0 CD1 A:TYR17 5.0 28.8 1.0

G.A.Mueller, L.L.Edwards, J.J.Aloor, M.B.Fessler, J.Glesner, A.Pomes, M.D.Chapman, R.E.London, L.C.Pedersen. The Structure of the Dust Mite Allergen Der P 7 Reveals Similarities to Innate Immune Proteins. J.Allergy Clin.Immunol. V. 125 909 2010.
ISSN: ISSN 0091-6749
PubMed: 20226507
DOI: 10.1016/J.JACI.2009.12.016