Sodium in PDB 3gza: Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution

The structure of Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution, PDB code: 3gza was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.07 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	117.052, 81.532, 111.572, 90.00, 103.55, 90.00
R / Rfree (%)	13.9 / 16.8

The binding sites of Sodium atom in the Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution (pdb code 3gza). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution, PDB code: 3gza:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na471 b:13.0 occ:1.00 O A:ILE53 2.3 24.6 1.0 O A:HIS48 2.4 24.8 1.0 O A:HOH629 2.4 15.8 1.0 OD1 A:ASP51 2.4 27.0 1.0 O A:HOH668 2.5 14.3 1.0 O A:HOH578 2.6 15.5 1.0 CG A:ASP51 3.3 26.1 1.0 C A:HIS48 3.5 25.0 1.0 C A:ILE53 3.5 24.9 1.0 OD2 A:ASP51 3.6 28.9 1.0 N A:ILE53 4.1 25.9 1.0 C A:ARG54 4.1 26.5 1.0 CA A:VAL49 4.1 25.8 1.0 N A:VAL49 4.2 25.9 1.0 O A:ARG54 4.2 27.2 1.0 C A:VAL49 4.3 25.8 1.0 N A:TYR55 4.3 27.9 1.0 O A:VAL49 4.4 25.8 1.0 CA A:ILE53 4.4 26.4 1.0 CB A:HIS48 4.4 24.6 1.0 ND1 A:HIS48 4.4 26.4 1.0 CA A:HIS48 4.5 24.5 1.0 N A:ASP51 4.5 27.1 1.0 N A:ARG54 4.5 25.7 1.0 O A:TRP302 4.5 25.2 1.0 CB A:ASP51 4.5 26.5 1.0 CA A:ARG54 4.6 25.9 1.0 CG1 A:ILE53 4.6 28.8 1.0 N A:GLY52 4.7 25.7 1.0 CA A:TYR55 4.7 26.8 1.0 CA A:ASP51 4.8 26.4 1.0 CG A:GLU303 4.8 27.2 1.0 CD A:PRO304 4.9 26.1 1.0 C A:ASP51 4.9 25.9 1.0 CG A:HIS48 4.9 25.0 1.0 N A:PHE50 4.9 25.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Putative Alpha-L-Fucosidase (NP_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.60 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na472 b:17.2 occ:1.00 O B:HOH1017 2.1 24.1 0.5 O B:ILE53 2.3 30.4 1.0 O B:HOH687 2.3 14.9 1.0 O B:HIS48 2.4 26.1 1.0 OD1 B:ASP51 2.4 28.1 1.0 O B:HOH1016 2.5 17.5 0.5 O B:HOH912 3.0 26.1 1.0 CG B:ASP51 3.3 30.2 1.0 C B:ILE53 3.5 33.5 1.0 C B:HIS48 3.5 25.6 1.0 OD2 B:ASP51 3.7 30.4 1.0 N B:ILE53 4.0 32.0 1.0 CA B:VAL49 4.1 25.1 1.0 N B:VAL49 4.2 24.7 1.0 C B:VAL49 4.2 24.3 1.0 O B:VAL49 4.2 25.2 1.0 C B:ARG54 4.3 43.1 1.0 CA B:ILE53 4.3 33.0 1.0 O B:ARG54 4.3 45.2 1.0 N B:ASP51 4.4 26.9 1.0 N B:TYR55 4.4 45.6 1.0 N B:ARG54 4.4 36.5 1.0 ND1 B:HIS48 4.4 33.1 1.0 CB B:HIS48 4.5 27.6 1.0 O B:TRP302 4.5 23.5 1.0 CA B:HIS48 4.5 26.4 1.0 CA B:ARG54 4.6 39.6 1.0 CB B:ASP51 4.6 28.8 1.0 N B:GLY52 4.6 29.1 1.0 CG1 B:ILE53 4.7 35.4 1.0 CG B:GLU303 4.7 31.2 1.0 CA B:ASP51 4.8 28.2 1.0 CA B:TYR55 4.8 47.3 1.0 C B:ASP51 4.9 28.8 1.0 N B:PHE50 4.9 24.9 1.0 CD B:PRO304 5.0 25.9 1.0 CG B:HIS48 5.0 30.7 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.