Sodium in PDB 3gyz: Crystal Structure of Ipgc From Shigella Flexneri

The structure of Crystal Structure of Ipgc From Shigella Flexneri, PDB code: 3gyz was solved by M.Lunelli, R.K.Lokareddy, A.Zychlinsky, M.Kolbe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.69 / 2.15
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.150, 115.150, 75.460, 90.00, 90.00, 120.00
R / Rfree (%)	19.1 / 21.4

The binding sites of Sodium atom in the Crystal Structure of Ipgc From Shigella Flexneri (pdb code 3gyz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ipgc From Shigella Flexneri, PDB code: 3gyz:

Sodium binding site 1 out of 1 in the Crystal Structure of Ipgc From Shigella Flexneri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ipgc From Shigella Flexneri within 5.0Å range: probe atom residue distance (Å) B Occ B:Na157 b:87.8 occ:1.00 O3 B:SO4152 3.8 73.8 1.0 CE1 B:HIS109 4.1 32.5 1.0 OE1 B:GLN81 4.1 40.6 1.0 CD B:GLN81 4.2 39.2 1.0 ND1 B:HIS109 4.3 37.8 1.0 NE2 B:GLN81 4.5 39.0 1.0 O2 B:SO4152 4.6 70.4 1.0 S B:SO4152 4.6 73.5 1.0 OH B:TYR47 4.7 52.0 1.0 NE2 B:HIS109 4.7 40.7 1.0 OH B:TYR93 4.8 32.6 1.0 CG1 B:ILE82 4.8 41.7 1.0 CB B:ALA78 4.8 31.9 1.0 CG B:GLN81 4.9 36.8 1.0 O4 B:SO4152 4.9 78.7 1.0

M.Lunelli, R.K.Lokareddy, A.Zychlinsky, M.Kolbe. Ipab-Ipgc Interaction Defines Binding Motif For Type III Secretion Translocator Proc.Natl.Acad.Sci.Usa V. 106 9661 2009.
ISSN: ISSN 0027-8424
PubMed: 19478065
DOI: 10.1073/PNAS.0812900106