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Sodium in PDB 3goa: Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase

Enzymatic activity of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase

All present enzymatic activity of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase:
2.3.1.16;

Protein crystallography data

The structure of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase, PDB code: 3goa was solved by S.M.Anderson, T.Skarina, O.Onopriyenko, Z.Wawrzak, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.000, 64.500, 74.400, 90.00, 104.50, 90.00
R / Rfree (%) 14.2 / 19.2

Other elements in 3goa:

The structure of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase (pdb code 3goa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase, PDB code: 3goa:

Sodium binding site 1 out of 1 in 3goa

Go back to Sodium Binding Sites List in 3goa
Sodium binding site 1 out of 1 in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na390

b:43.8
occ:1.00
 OE1 B:GLU385 2.2 17.8 1.0
O B:HOH939 2.5 33.3 1.0
CD B:GLU385 3.1 27.1 1.0
CD B:ARG266 3.2 41.6 1.0
CB B:GLU385 3.7 15.5 1.0
NH2 B:ARG266 3.8 52.7 1.0
CG B:GLU385 3.9 20.4 1.0
NE B:ARG266 3.9 48.0 1.0
NH1 B:ARG268 4.0 15.0 1.0
OE2 B:GLU385 4.0 28.9 1.0
CB B:ARG268 4.0 8.3 1.0
CG B:ARG266 4.1 23.6 1.0
CG B:ARG268 4.1 12.5 1.0
CZ B:ARG266 4.2 52.2 1.0
CA B:ARG268 4.2 10.5 1.0
CB B:ARG266 4.3 15.9 1.0
CD B:ARG268 4.4 13.2 1.0
O B:ILE267 4.4 11.7 1.0
NE2 B:GLN3 4.4 44.4 1.0
N B:ARG268 4.7 10.1 1.0
C B:ILE267 4.8 11.1 1.0
CZ B:ARG268 5.0 15.3 1.0

Reference:

S.M.Anderson, T.Skarina, O.Onopriyenko, Z.Wawrzak, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Mon Oct 7 10:16:27 2024

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