Sodium in PDB 3dnx: SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi.

The structure of SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi., PDB code: 3dnx was solved by J.Osipiuk, R.Mulligan, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.00 / 1.94
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	59.892, 59.892, 99.868, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 21.3

The binding sites of Sodium atom in the SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi. (pdb code 3dnx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi., PDB code: 3dnx:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:23.4 occ:1.00 N A:GLU30 3.2 27.0 1.0 O A:HOH232 3.2 36.0 1.0 NE2 A:HIS132 3.3 30.5 1.0 O A:GLU30 3.8 27.2 1.0 CD2 A:HIS132 3.8 33.2 1.0 CB A:VAL29 3.9 26.0 1.0 CA A:VAL29 4.0 26.1 1.0 CA A:GLU30 4.0 28.7 1.0 CB A:GLU30 4.0 29.5 1.0 C A:VAL29 4.1 26.7 1.0 CG A:ARG136 4.3 36.8 1.0 C A:GLU30 4.3 27.6 1.0 CG1 A:VAL29 4.4 26.5 1.0 CE1 A:HIS132 4.5 32.6 1.0 NE A:ARG136 4.7 48.2 1.0 O A:HOH302 4.7 44.1 1.0 CG A:GLU30 4.8 35.0 1.0 CB A:ARG136 4.8 31.8 1.0 CD A:ARG136 4.8 42.5 1.0 O A:HOH208 5.0 27.2 1.0

Sodium binding site 2 out of 2 in the SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:55.2 occ:1.00 O A:HOH299 2.2 40.4 1.0 O A:HOH306 2.3 46.6 1.0 O A:HOH244 2.3 42.0 1.0 OD2 A:ASP62 2.4 38.8 1.0 O A:CYS56 2.5 31.7 1.0 CG A:ASP62 3.3 39.2 1.0 OD1 A:ASP62 3.4 40.6 1.0 OD2 A:ASP41 3.7 29.4 1.0 C A:CYS56 3.7 30.9 1.0 CD A:LYS57 4.3 38.8 1.0 CA A:LYS57 4.3 32.8 1.0 CG A:ASP41 4.3 29.7 1.0 NZ A:LYS57 4.5 43.5 1.0 OD1 A:ASP41 4.5 28.4 1.0 N A:LYS57 4.5 31.2 1.0 CA A:GLY10 4.6 43.3 1.0 N A:SER58 4.7 34.4 1.0 CB A:ASP62 4.7 36.4 1.0 O A:HOH225 4.7 30.9 1.0 CA A:CYS56 4.7 30.8 1.0 CE A:LYS57 4.8 42.2 1.0 OG A:SER58 4.8 40.5 1.0 CB A:CYS56 4.9 30.8 1.0 O A:HOH243 5.0 48.9 1.0 N A:CYS56 5.0 29.1 1.0

J.Osipiuk, R.Mulligan, S.Clancy, A.Joachimiak. X-Ray Crystal Structure of SPO1766 Protein of Unknown Function From Silicibacter Pomeroyi. To Be Published.