Sodium in PDB 3d32: Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide

The structure of Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide, PDB code: 3d32 was solved by O.H.Weiergraeber, T.Stangler, D.Willbold, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.17 / 1.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	129.287, 35.415, 58.209, 90.00, 100.59, 90.00
R / Rfree (%)	17.7 / 19.5

The structure of Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Sodium atom in the Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide (pdb code 3d32). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide, PDB code: 3d32:

Sodium binding site 1 out of 1 in the Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Complex of Gaba(A) Receptor-Associated Protein (Gabarap) with A Synthetic Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Na120 b:27.8 occ:1.00 O A:HOH194 2.3 24.7 1.0 O A:HOH207 2.3 28.1 1.0 O A:LEU46 2.4 12.0 1.0 OD1 A:ASP45 2.9 18.1 1.0 CG A:ASP45 3.3 16.6 1.0 C A:LEU46 3.6 10.8 1.0 OD2 A:ASP45 3.7 19.4 1.0 O A:ASP47 3.8 9.1 0.5 O A:HOH203 3.9 24.9 1.0 O A:HOH230 4.0 32.7 1.0 O A:HOH215 4.0 24.6 1.0 CB A:ASP45 4.1 14.6 1.0 O A:HOH142 4.1 16.2 1.0 CA A:ASP47 4.3 9.7 0.5 C A:ASP47 4.3 9.2 0.5 NZ A:LYS49 4.3 14.6 1.0 N A:LEU46 4.3 11.3 1.0 N A:ASP47 4.5 10.0 0.5 N A:ASP47 4.5 10.2 0.5 O A:HOH193 4.6 30.0 1.0 CA A:LEU46 4.6 10.7 1.0 C A:ASP45 4.6 13.5 1.0 O A:HOH247 4.6 37.2 1.0 O A:ASP47 4.6 9.7 0.5 CA A:ASP47 4.6 10.3 0.5 C A:ASP47 4.7 9.7 0.5 CA A:ASP45 4.9 13.8 1.0

O.H.Weiergraber, T.Stangler, Y.Thielmann, J.Mohrluder, K.Wiesehan, D.Willbold. Ligand Binding Mode of Gaba(A) Receptor-Associated Protein. J.Mol.Biol. V. 381 1320 2008.
ISSN: ISSN 0022-2836
PubMed: 18638487
DOI: 10.1016/J.JMB.2008.06.086