Sodium in PDB 3b0z: Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium

The structure of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium, PDB code: 3b0z was solved by V.A.Meshcheryakov, F.A.Samatey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.07 / 2.45
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	49.102, 49.102, 143.045, 90.00, 90.00, 90.00
R / Rfree (%)	23.1 / 24.7

The structure of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Sodium atom in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium (pdb code 3b0z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium, PDB code: 3b0z:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Na23 b:79.6 occ:1.00 O A:HOH13 2.1 45.6 1.0 OD1 A:ASP264 2.6 58.3 1.0 CG A:ASP264 3.5 56.2 1.0 OD2 A:ASP264 3.7 62.2 1.0 O A:LYS262 4.1 49.1 1.0 NE2 B:GLN278 4.5 61.4 1.0 CG B:GLN278 4.7 54.6 1.0 CB A:ASP264 4.9 52.8 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Cytoplasmic Domain of Flhb From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ B:Na24 b:76.9 occ:1.00 OE2 B:GLU327 2.0 87.5 1.0 O B:HOH4 2.3 27.4 1.0 CD B:GLU327 3.1 85.4 1.0 OE1 B:GLU327 3.6 88.0 1.0 CG B:GLU327 4.4 76.7 1.0

V.A.Meshcheryakov, A.Kitao, H.Matsunami, F.A.Samatey. Inhibition of A Type III Secretion System By the Deletion of A Short Loop in One of Its Membrane Proteins Acta Crystallogr.,Sect.D V. 69 812 2013.
ISSN: ISSN 0907-4449
PubMed: 23633590
DOI: 10.1107/S0907444913002102