Sodium in PDB 3az7: Crystal Structure of Pt/T-Hewl

All present enzymatic activity of Crystal Structure of Pt/T-Hewl:
3.2.1.17;

The structure of Crystal Structure of Pt/T-Hewl, PDB code: 3az7 was solved by S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.31 / 2.10
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.412, 78.412, 36.558, 90.00, 90.00, 90.00
R / Rfree (%)	21.9 / 30.3

The structure of Crystal Structure of Pt/T-Hewl also contains other interesting chemical elements:

Platinum

(Pt)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of Pt/T-Hewl (pdb code 3az7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Pt/T-Hewl, PDB code: 3az7:

Sodium binding site 1 out of 1 in the Crystal Structure of Pt/T-Hewl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Pt/T-Hewl within 5.0Å range: probe atom residue distance (Å) B Occ A:Na135 b:52.9 occ:1.00 O A:SER60 2.0 42.5 1.0 O A:CYS64 2.4 38.4 1.0 OG A:SER72 2.4 54.5 1.0 O A:ARG73 2.6 52.5 1.0 O A:HOH155 2.6 47.4 1.0 C A:SER60 3.2 41.5 1.0 CB A:SER72 3.3 55.7 1.0 C A:CYS64 3.5 38.8 1.0 C A:ARG73 3.6 52.8 1.0 N A:ARG73 3.9 54.1 1.0 CA A:SER60 4.0 40.2 1.0 CA A:ASN65 4.0 39.9 1.0 C A:SER72 4.1 55.0 1.0 N A:ASN65 4.2 39.4 1.0 CB A:SER60 4.2 38.0 1.0 N A:ARG61 4.2 43.1 1.0 CA A:SER72 4.3 55.5 1.0 O A:ARG61 4.3 46.5 1.0 N A:CYS64 4.3 38.5 1.0 PT A:PT132 4.3 0.9 0.5 C A:ARG61 4.3 45.6 1.0 CA A:ARG73 4.4 54.1 1.0 N A:ASN74 4.4 51.7 1.0 CA A:ARG61 4.5 45.9 1.0 CA A:CYS64 4.5 38.8 1.0 CB A:THR69 4.6 47.1 1.0 CA A:ASN74 4.6 50.1 1.0 O A:SER72 4.6 55.0 1.0 ND2 A:ASN65 4.6 42.4 1.0 N A:TRP62 4.7 45.2 1.0 N A:ASP66 4.7 39.9 1.0 CB A:ASN74 4.9 49.5 1.0 N A:TRP63 4.9 40.9 1.0 CB A:ASN65 4.9 40.3 1.0 C A:ASN65 5.0 39.5 1.0 C A:TRP62 5.0 43.5 1.0

S.Abe, M.Tsujimoto, K.Yoneda, M.Ohba, T.Hikage, M.Takano, S.Kitagawa, T.Ueno. Porous Protein Crystals As Reaction Vessels For Controlling Magnetic Properties of Nanoparticles Small V. 8 1314 2012.
ISSN: ISSN 1613-6810
PubMed: 22383363
DOI: 10.1002/SMLL.201101866