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Sodium in PDB 2zq3: The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution

Enzymatic activity of The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution

All present enzymatic activity of The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution:
3.2.1.17;

Protein crystallography data

The structure of The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution, PDB code: 2zq3 was solved by S.Aibara, A.Suzuki, A.Kidera, K.Shibata, M.Hirose, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.45 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.542, 67.492, 30.389, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 20.7

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution (pdb code 2zq3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution, PDB code: 2zq3:

Sodium binding site 1 out of 1 in 2zq3

Go back to Sodium Binding Sites List in 2zq3
Sodium binding site 1 out of 1 in the The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.6 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na160

b:16.4
occ:1.00
 O A:SER60 2.1 14.3 1.0
O A:HOH354 2.2 17.5 1.0
O A:HOH224 2.3 15.0 1.0
O A:HOH203 2.4 9.2 1.0
O A:CYS64 2.5 8.8 1.0
CB A:SER72 2.6 26.0 1.0
OG A:SER72 2.9 30.2 1.0
C A:SER60 3.3 12.7 1.0
C A:CYS64 3.6 8.5 1.0
CA A:SER72 3.8 27.0 1.0
CA A:ASN65 3.9 8.8 1.0
N A:ARG73 3.9 25.8 1.0
N A:ASN74 4.0 16.9 1.0
CA A:SER60 4.1 9.5 1.0
N A:ASN65 4.2 9.5 1.0
N A:ARG61 4.3 14.7 1.0
C A:ARG61 4.3 14.9 1.0
C A:SER72 4.3 26.9 1.0
CA A:ARG61 4.3 16.6 1.0
O A:HOH220 4.4 13.9 1.0
CB A:SER60 4.4 9.7 1.0
ND2 A:ASN65 4.4 9.4 1.0
O A:ARG61 4.5 16.0 1.0
O A:HOH255 4.5 24.0 1.0
CA A:ASN74 4.6 14.6 1.0
N A:CYS64 4.6 7.8 1.0
CB A:ASN65 4.6 9.2 1.0
N A:TRP62 4.7 12.9 1.0
CB A:ASN74 4.7 14.2 1.0
CA A:CYS64 4.7 8.1 1.0
CB A:THR69 4.7 10.2 1.0
N A:ASP66 4.7 9.5 1.0
C A:ARG73 4.8 22.6 1.0
C A:ASN65 4.9 9.4 1.0
CA A:ARG73 4.9 24.6 1.0

Reference:

S.Aibara, A.Suzuki, A.Kidera, K.Shibata, T.Yamane, L.J.Delucas, M.Hirose. The Crystal Structure of the Orthorhombic Form of Hen Egg White Lysozyme at 1.5 Angstroms Resolution To Be Published.
Page generated: Sun Aug 17 12:34:37 2025

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