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Sodium in PDB 2wdy: Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A

Enzymatic activity of Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A

All present enzymatic activity of Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A:
2.7.8.7;

Protein crystallography data

The structure of Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A, PDB code: 2wdy was solved by P.Dall'aglio, C.Arthur, M.P.Crump, J.Crosby, A.T.Hadfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.50 / 1.40
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 72.831, 72.831, 72.831, 90.00, 90.00, 90.00
R / Rfree (%) 18.875 / 21.498

Other elements in 2wdy:

The structure of Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A (pdb code 2wdy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A, PDB code: 2wdy:

Sodium binding site 1 out of 1 in 2wdy

Go back to Sodium Binding Sites List in 2wdy
Sodium binding site 1 out of 1 in the Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Streptomyces Coelicolor D111A Acps Mutant in Complex with Cofactor Coa at 1.4 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1127

b:30.1
occ:0.33
 O A:HOH2081 2.0 28.8 0.3
O A:HOH2166 2.2 28.6 1.0
O A:HOH2167 2.3 32.8 0.3
N A:GLY90 3.8 13.9 1.0
CB A:THR89 4.1 16.1 1.0
CA A:THR89 4.4 14.1 1.0
CG2 A:THR89 4.5 16.6 1.0
C A:THR89 4.6 13.9 1.0
CA A:GLY90 4.6 13.5 1.0
O A:HOH2165 4.7 29.6 1.0
O A:HOH2161 4.7 28.4 1.0
O A:HOH2080 4.9 12.3 0.3

Reference:

P.Dall'aglio, C.Arthur, C.Williams, K.Vasilakis, H.J.Maple, J.Crosby, M.P.Crump, A.T.Hadfield. Analysis of Streptomyces Coelicolor Phosphopantetheinyl Transferase, Acps, Reveals the Basis For Relaxed Substrate Specificity. Biochemistry V. 50 5704 2011.
ISSN: ISSN 0006-2960
PubMed: 21595442
DOI: 10.1021/BI2003668
Page generated: Mon Oct 7 04:37:31 2024

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