Sodium in PDB 2v4v: Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose

The structure of Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose, PDB code: 2v4v was solved by D.W.Abbott, E.Ficko-Blean, A.Lammerts Van Bueren, P.M.Coutinho, B.Henrissat, H.J.Gilbert, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	93.25 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.026, 43.598, 93.323, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 22.2

The binding sites of Sodium atom in the Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose (pdb code 2v4v). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose, PDB code: 2v4v:

Sodium binding site 1 out of 1 in the Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Family 6 Carbohydrate-Binding Module From Clostridium Cellulolyticum in Complex with Xylose within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3052 b:8.0 occ:1.00 O A:GLU949 2.4 7.8 1.0 O A:ASN1044 2.4 8.8 1.0 OE1 A:GLU929 2.4 9.4 1.0 OD1 A:ASN1044 2.4 7.4 1.0 O A:HOH2030 2.5 11.8 1.0 OE1 A:GLU931 2.6 9.0 1.0 C A:ASN1044 3.3 7.8 1.0 CD A:GLU931 3.4 12.0 1.0 C A:GLU949 3.5 8.2 1.0 CD A:GLU929 3.6 11.8 1.0 OE2 A:GLU931 3.6 14.4 1.0 CG A:ASN1044 3.6 10.6 1.0 O A:HOH2029 3.7 17.6 1.0 CA A:ASN1044 3.8 7.9 1.0 N A:GLU949 3.9 8.4 1.0 CB A:GLU929 4.1 9.1 1.0 N A:ALA930 4.1 7.9 1.0 CA A:GLU949 4.3 8.1 1.0 CB A:ASN1044 4.3 7.7 1.0 N A:TRP1045 4.4 7.7 1.0 CG A:GLU929 4.4 9.4 1.0 CA A:GLU929 4.4 8.9 1.0 OE2 A:GLU929 4.5 17.0 1.0 N A:ASP950 4.6 8.1 1.0 C A:GLU929 4.7 8.9 1.0 CB A:TRP1045 4.7 8.8 1.0 ND2 A:ASN1044 4.7 7.6 1.0 CB A:GLU949 4.7 9.0 1.0 CA A:ASP950 4.7 8.0 1.0 N A:GLU931 4.8 7.3 1.0 CA A:TRP1045 4.8 8.1 1.0 CG A:GLU931 4.9 10.1 1.0 C A:GLY948 5.0 8.5 1.0

D.W.Abbott, E.Ficko-Blean, A.L.Van Bueren, A.Rogowski, A.Cartmell, P.M.Coutinho, B.Henrissat, H.J.Gilbert, A.B.Boraston. Analysis of the Structural and Functional Diversity of Plant Cell Wall Specific Family 6 Carbohydrate Binding Modules. Biochemistry V. 48 10395 2009.
ISSN: ISSN 0006-2960
PubMed: 19788273
DOI: 10.1021/BI9013424