Sodium in PDB 2pod: Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243

The structure of Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243, PDB code: 2pod was solved by Y.Patskovsky, J.Bonanno, J.M.Sauder, J.M.Gilmore, M.Iizuka, S.Ozyurt, S.R.Wasserman, D.Smith, J.Gerlt, S.K.Burley, S.C.Almo, New York Sgxresearch Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.34
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	146.771, 146.771, 85.531, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 27.5

The binding sites of Sodium atom in the Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243 (pdb code 2pod). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243, PDB code: 2pod:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na409 b:73.7 occ:1.00 OE1 A:GLU218 2.1 60.9 1.0 OE2 A:GLU270 2.1 63.1 1.0 OE2 A:GLU244 2.2 54.3 1.0 CD A:GLU270 3.1 54.5 1.0 CD A:GLU218 3.3 53.0 1.0 CD A:GLU244 3.4 45.2 1.0 OE1 A:GLU270 3.5 58.8 1.0 NZ A:LYS174 3.6 43.2 1.0 NE2 A:HIS320 3.6 51.2 1.0 CD2 A:HIS320 3.9 48.0 1.0 OE2 A:GLU218 4.0 47.5 1.0 OE1 A:GLU244 4.1 42.8 1.0 O A:HOH416 4.2 50.0 1.0 CE A:LYS174 4.3 37.1 1.0 CG A:GLU244 4.3 33.7 1.0 CG A:GLU218 4.4 39.5 1.0 CG A:GLU270 4.4 48.4 1.0 OH B:TYR71 4.6 62.0 1.0 SE A:MSE291 4.7 91.1 1.0 CE1 A:HIS320 4.7 42.6 1.0 OD1 A:ASP245 4.7 63.3 1.0 OE2 A:GLU345 4.9 42.4 1.0 NE2 A:HIS220 5.0 56.4 1.0 CB A:GLU270 5.0 42.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei K96243 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na409 b:66.7 occ:1.00 OE2 B:GLU270 2.2 65.4 1.0 OE1 B:GLU218 2.3 74.2 1.0 OE2 B:GLU244 2.7 49.4 1.0 CD B:GLU270 3.1 60.0 1.0 OE1 B:GLU270 3.4 65.3 1.0 NE2 B:HIS320 3.5 42.7 1.0 CD B:GLU218 3.5 69.7 1.0 NZ B:LYS174 3.5 53.4 1.0 O B:HOH462 3.7 62.5 1.0 CD B:GLU244 3.9 45.6 1.0 CD2 B:HIS320 3.9 40.0 1.0 CE B:LYS174 4.2 45.9 1.0 OE2 B:GLU218 4.2 66.0 1.0 CE1 B:HIS320 4.4 38.5 1.0 CG B:GLU270 4.5 52.0 1.0 OH A:TYR71 4.5 56.6 1.0 CG B:GLU218 4.5 51.3 1.0 OE1 B:GLU244 4.5 50.3 1.0 CE B:MSE291 4.6 97.6 1.0 NE2 B:HIS220 4.7 65.3 1.0 CD2 B:HIS220 4.8 60.1 1.0 SE B:MSE291 4.9 95.3 1.0 CG B:GLU244 4.9 42.9 1.0 CG B:HIS320 4.9 43.9 1.0 OE2 B:GLU345 4.9 67.5 1.0

Y.Patskovsky, J.Bonanno, J.M.Sauder, J.M.Gilmore, M.Iizuka, M.Gheyi, S.Ozyurt, S.R.Wasserman, D.Smith, J.Gerlt, S.K.Burley, S.C.Almo. Crystal Structure of A Member of Enolase Superfamily From Burkholderia Pseudomallei. To Be Published.