Sodium in PDB 2p7j: Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus

The structure of Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus, PDB code: 2p7j was solved by R.Wu, A.James, A.Joachimiak, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.69 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	72.980, 81.596, 121.851, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 23.9

The binding sites of Sodium atom in the Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus (pdb code 2p7j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus, PDB code: 2p7j:

Sodium binding site 1 out of 1 in the Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na401 b:25.5 occ:1.00 O B:HOH653 3.1 31.9 1.0 N B:GLY141 3.2 41.3 1.0 O B:HOH721 3.3 36.5 1.0 NH1 B:ARG115 3.3 36.5 1.0 NZ B:LYS112 3.4 36.5 1.0 CD B:ARG115 3.7 36.5 1.0 N B:LYS140 3.7 42.5 1.0 CA B:GLY141 3.9 40.3 1.0 CB B:ARG138 3.9 40.2 1.0 CD B:LYS112 3.9 32.8 1.0 O B:ARG138 4.0 40.8 1.0 CG B:ARG115 4.0 36.9 1.0 CE B:LYS112 4.1 33.3 1.0 C B:ARG138 4.1 41.1 1.0 CA B:LYS140 4.2 42.6 1.0 C B:LYS140 4.2 42.2 1.0 C B:ASP139 4.2 41.9 0.4 CZ B:ARG115 4.3 40.4 1.0 C B:ASP139 4.3 42.3 0.6 N B:ASP139 4.4 41.3 0.6 NE B:ARG115 4.4 37.9 1.0 N B:ASP139 4.4 41.1 0.4 CA B:ASP139 4.4 42.2 0.6 CA B:ASP139 4.5 41.5 0.4 CA B:ARG138 4.7 40.7 1.0 O B:HOH616 4.9 28.1 1.0 O B:HOH720 4.9 42.8 1.0 C B:GLY141 4.9 40.2 1.0 O B:HOH630 5.0 32.2 1.0 O4 B:SO4502 5.0 34.1 1.0 O B:ASP139 5.0 42.0 0.4

R.Wu, A.James, A.Joachimiak. The Crystal Structure of the Domain of Putative Sensory Box/Ggdef Family Protein From Vibrio Parahaemolyticus To Be Published.