Sodium in PDB 2oaj: Crystal Structure of SRO7 From S. Cerevisiae

The structure of Crystal Structure of SRO7 From S. Cerevisiae, PDB code: 2oaj was solved by D.A.Hattendorf, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.12 / 2.40
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	130.520, 130.520, 116.023, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 26.2

The structure of Crystal Structure of SRO7 From S. Cerevisiae also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the Crystal Structure of SRO7 From S. Cerevisiae (pdb code 2oaj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of SRO7 From S. Cerevisiae, PDB code: 2oaj:

Sodium binding site 1 out of 1 in the Crystal Structure of SRO7 From S. Cerevisiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of SRO7 From S. Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na964 b:33.5 occ:1.00 O A:ASP523 2.6 19.2 1.0 O A:HOH1178 2.7 33.5 1.0 O A:SER525 2.8 22.9 1.0 O A:HOH1203 2.8 26.2 1.0 O A:ASP531 3.0 18.2 1.0 O A:GLN530 3.0 24.2 1.0 CA A:ASP531 3.5 20.6 1.0 C A:ASP531 3.6 19.6 1.0 O A:HOH1011 3.6 25.5 1.0 C A:GLN530 3.7 22.9 1.0 C A:ASP523 3.7 19.4 1.0 C A:SER525 3.9 25.4 1.0 N A:ASP531 3.9 21.9 1.0 O A:HOH1210 4.1 33.6 1.0 N A:SER525 4.4 24.6 1.0 O A:HOH1045 4.4 21.7 1.0 N A:ASP523 4.4 14.1 1.0 CA A:ASP523 4.5 16.7 1.0 CB A:ASP523 4.5 17.6 1.0 C A:ALA524 4.5 24.5 1.0 CD1 A:TYR522 4.6 17.4 1.0 CD2 A:HIS526 4.6 38.9 1.0 N A:ALA524 4.7 21.2 1.0 N A:ASN532 4.7 17.2 1.0 CA A:SER525 4.7 26.4 1.0 OD1 A:ASP531 4.8 20.5 1.0 CB A:GLN530 4.8 18.8 1.0 CA A:GLN530 4.8 22.4 1.0 CA A:ALA524 4.9 23.6 1.0 CB A:ASP531 4.9 19.0 1.0 N A:HIS526 4.9 27.8 1.0 O A:ALA533 4.9 11.8 1.0 CA A:HIS526 5.0 29.3 1.0 O A:ALA524 5.0 25.0 1.0

D.A.Hattendorf, A.Andreeva, A.Gangar, P.J.Brennwald, W.I.Weis. Structure of the Yeast Polarity Protein SRO7 Reveals A Snare Regulatory Mechanism. Nature V. 446 567 2007.
ISSN: ISSN 0028-0836
PubMed: 17392788
DOI: 10.1038/NATURE05635