Sodium in PDB 2jgp: Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc

The structure of Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc, PDB code: 2jgp was solved by S.A.Samel, G.Schoenafinger, T.A.Knappe, M.A.Marahiel, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.81 / 1.85
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.973, 84.973, 164.969, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 23.8

The binding sites of Sodium atom in the Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc (pdb code 2jgp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc, PDB code: 2jgp:

Sodium binding site 1 out of 1 in the Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the TYCC5-6 Pcp-C Bidomain of the Tyrocidine Synthetase Tycc within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1527 b:69.2 occ:1.00 O A:HOH2250 2.1 50.1 1.0 OE1 A:GLN398 2.2 63.3 1.0 O A:HOH2021 2.3 45.5 1.0 OD1 A:ASP402 2.7 58.8 1.0 O A:HOH2019 3.2 52.6 1.0 CD A:GLN398 3.4 59.8 1.0 CG A:ASP402 3.8 56.4 1.0 CB A:GLN19 3.8 64.4 1.0 CB A:LEU401 3.8 55.0 1.0 O A:GLN398 4.1 55.2 1.0 NE2 A:GLN398 4.2 60.5 1.0 N A:ASP402 4.2 54.5 1.0 CG A:GLN19 4.3 67.4 1.0 OD2 A:ASP402 4.4 58.5 1.0 CG A:GLN398 4.4 58.4 1.0 CD1 A:LEU401 4.5 56.2 1.0 C A:LEU401 4.5 54.5 1.0 CA A:GLN19 4.6 63.7 1.0 O A:HOH2022 4.6 44.9 1.0 O A:HOH2249 4.6 49.3 1.0 CA A:ASP402 4.6 54.8 1.0 OE2 A:GLU22 4.7 66.6 1.0 CA A:LEU401 4.8 54.7 1.0 CB A:ASP402 4.8 55.4 1.0 CG A:LEU401 4.8 55.6 1.0 CA A:GLN398 4.9 55.9 1.0 C A:GLN398 4.9 55.5 1.0

S.A.Samel, G.Schoenafinger, T.A.Knappe, M.A.Marahiel, L.-O.Essen. Structural and Functional Insights Into A Peptide Bond-Forming Bidomain From A Nonribosomal Peptide Synthetase. Structure V. 15 781 2007.
ISSN: ISSN 0969-2126
PubMed: 17637339
DOI: 10.1016/J.STR.2007.05.008