Sodium in PDB 2j6k: N-Terminal SH3 Domain of Cms (CD2AP Human Homolog)

The structure of N-Terminal SH3 Domain of Cms (CD2AP Human Homolog), PDB code: 2j6k was solved by G.Moncalian, N.Cardenes, Y.L.Deribe, M.Spinola-Amilibia, I.Dikic, J.Bravo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	94.49 / 2.77
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	120.018, 120.018, 153.930, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 27.4

The binding sites of Sodium atom in the N-Terminal SH3 Domain of Cms (CD2AP Human Homolog) (pdb code 2j6k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the N-Terminal SH3 Domain of Cms (CD2AP Human Homolog), PDB code: 2j6k:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the N-Terminal SH3 Domain of Cms (CD2AP Human Homolog)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of N-Terminal SH3 Domain of Cms (CD2AP Human Homolog) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1059 b:26.8 occ:0.25 OD1 A:ASN43 2.5 36.3 1.0 CG A:ASN43 3.4 35.5 1.0 ND2 A:ASN43 3.6 40.1 1.0 CB A:ASN43 4.8 31.8 1.0

Sodium binding site 2 out of 2 in the N-Terminal SH3 Domain of Cms (CD2AP Human Homolog)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of N-Terminal SH3 Domain of Cms (CD2AP Human Homolog) within 5.0Å range: probe atom residue distance (Å) B Occ I:Na1059 b:20.0 occ:0.25 O I:HOH2004 2.3 26.8 0.2 OD1 I:ASN43 2.4 32.6 1.0 CG I:ASN43 3.4 32.2 1.0 ND2 I:ASN43 3.7 34.8 1.0 CB I:ASN43 4.8 31.1 1.0

G.Moncalian, N.Cardenes, Y.L.Deribe, M.Spinola-Amilibia, I.Dikic, J.Bravo. Atypical Polyproline Recognition By the Cms N- Terminal SH3 Domain. J.Biol.Chem. V. 281 38845 2006.
ISSN: ISSN 0021-9258
PubMed: 17020880
DOI: 10.1074/JBC.M606411200