Sodium in PDB 2gkp: Protein of Unknown Function NMB0488 From Neisseria Meningitidis

The structure of Protein of Unknown Function NMB0488 From Neisseria Meningitidis, PDB code: 2gkp was solved by J.Osipiuk, L.Volkart, M.Bargassa, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.40 / 1.35
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	48.102, 79.877, 44.624, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 20.6

The binding sites of Sodium atom in the Protein of Unknown Function NMB0488 From Neisseria Meningitidis (pdb code 2gkp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Protein of Unknown Function NMB0488 From Neisseria Meningitidis, PDB code: 2gkp:

Sodium binding site 1 out of 1 in the Protein of Unknown Function NMB0488 From Neisseria Meningitidis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Protein of Unknown Function NMB0488 From Neisseria Meningitidis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:13.8 occ:1.00 NZ A:LYS14 3.1 16.1 1.0 O A:HOH426 3.1 16.7 1.0 O A:HOH468 3.2 18.9 1.0 NE1 A:TRP25 3.2 13.0 1.0 O A:HOH552 3.4 27.2 1.0 CB A:GLN23 3.7 13.3 1.0 CA A:GLY12 3.8 12.0 1.0 CD A:LYS14 3.8 13.8 1.0 CE A:LYS14 3.9 14.6 1.0 CE2 A:TRP25 4.0 12.6 1.0 CG A:GLN23 4.1 15.4 1.0 C A:GLY12 4.1 11.2 1.0 CZ2 A:TRP25 4.2 14.6 1.0 CG A:LYS14 4.2 13.8 1.0 CG A:PRO33 4.2 15.2 1.0 CD1 A:TRP25 4.3 12.7 1.0 O A:HOH435 4.4 18.5 1.0 O A:GLY12 4.5 11.3 1.0 N A:GLY12 4.5 11.5 1.0 N A:TYR13 4.5 11.1 1.0 O A:HOH445 4.6 19.0 1.0 CB A:PRO33 4.8 13.6 1.0 CA A:GLN23 5.0 12.4 1.0

J.Osipiuk, L.Volkart, M.Bargassa, A.Joachimiak. X-Ray Crystal Structure of Hypothetical Protein NMB0488 From Neisseria Meningitidis. To Be Published.