Sodium in PDB 2gin: X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana

All present enzymatic activity of X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana:
5.3.99.6;

The structure of X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana, PDB code: 2gin was solved by E.Hofmann, F.Schaller, P.Zerbe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.900, 104.200, 86.700, 90.00, 95.10, 90.00
R / Rfree (%)	20.7 / 24.8

The binding sites of Sodium atom in the X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana (pdb code 2gin). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana, PDB code: 2gin:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Na801 b:23.1 occ:1.00 O A:HOH930 4.1 34.0 1.0 O B:HOH1006 4.1 33.0 1.0 O C:HOH287 4.4 30.0 1.0 CE2 B:TYR126 4.5 24.8 1.0 CE2 A:TYR126 4.6 25.1 1.0 CE2 C:TYR126 4.7 24.4 1.0 CZ B:TYR126 4.8 27.9 1.0 OH B:TYR126 4.8 31.0 1.0 CZ C:TYR126 4.9 27.6 1.0 OH C:TYR126 4.9 32.6 1.0 CZ A:TYR126 5.0 27.6 1.0

Sodium binding site 2 out of 2 in the X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of X-Ray Structure of the Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ D:Na802 b:14.3 occ:1.00 O F:HOH970 3.8 35.4 1.0 O D:HOH916 4.1 29.9 1.0 O E:HOH201 4.2 27.1 1.0 CE2 D:TYR126 4.5 21.6 1.0 CZ D:TYR126 4.7 23.7 1.0 CE2 F:TYR126 4.7 23.2 1.0 OH D:TYR126 4.7 25.2 1.0 CE2 E:TYR126 4.7 26.0 1.0 CZ F:TYR126 4.9 24.8 1.0 OH F:TYR126 4.9 26.1 1.0 CZ E:TYR126 4.9 26.3 1.0 OH E:TYR126 5.0 26.0 1.0

E.Hofmann, P.Zerbe, F.Schaller. The Crystal Structure of Arabidopsis Thaliana Allene Oxide Cyclase: Insights Into the Oxylipin Cyclization Reaction Plant Cell V. 18 3201 2006.
ISSN: ISSN 1040-4651
PubMed: 17085685
DOI: 10.1105/TPC.106.043984