Sodium in PDB 2dev: Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions

The structure of Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions, PDB code: 2dev was solved by E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.89 / 2.45
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	65.764, 65.764, 204.285, 90.00, 90.00, 90.00
R / Rfree (%)	24.6 / 28.8

The structure of Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions also contains other interesting chemical elements:

Caesium	(Cs)	1 atom
Chlorine	(Cl)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions (pdb code 2dev). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions, PDB code: 2dev:

Sodium binding site 1 out of 1 in the Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of TT0972 Protein From Thermus Thermophilus with Cs(+) Ions within 5.0Å range: probe atom residue distance (Å) B Occ D:Na1004 b:53.4 occ:1.00 OE1 E:GLU19 2.7 63.1 1.0 OE1 D:GLU19 2.8 49.4 1.0 OE1 F:GLU19 2.9 57.8 1.0 OE2 E:GLU19 2.9 62.0 1.0 CD E:GLU19 3.2 59.9 1.0 OE2 F:GLU19 3.4 54.8 1.0 OE2 D:GLU19 3.4 50.3 1.0 CD D:GLU19 3.4 48.7 1.0 CD F:GLU19 3.5 53.9 1.0 CD1 E:LEU18 4.4 49.5 1.0 CB D:LEU18 4.4 48.1 1.0 CD1 D:LEU18 4.4 44.8 1.0 CB E:LEU18 4.5 51.4 1.0 CD1 F:LEU18 4.6 34.9 1.0 CB F:LEU18 4.6 35.8 1.0 CG E:GLU19 4.6 56.8 1.0 CG D:LEU18 4.7 45.5 1.0 CG D:GLU19 4.8 45.7 1.0 CG E:LEU18 4.9 51.1 1.0 N D:GLU19 4.9 46.3 1.0 N D:LEU18 4.9 53.1 1.0 N E:GLU19 4.9 52.2 1.0 CG F:LEU18 5.0 36.1 1.0 CG F:GLU19 5.0 48.6 1.0

E.Inagaki, N.Nakano, A.Shinkai, S.Yokoyama. Crystal Structure of TT0972 Protein From Thermus Thermophilus To Be Published.