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Sodium in PDB 2ciq: Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase.

Enzymatic activity of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase.

All present enzymatic activity of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase.:
5.1.3.15;

Protein crystallography data

The structure of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase., PDB code: 2ciq was solved by M.Graille, J.-P.Baltaze, N.Leulliot, D.Liger, S.Quevillon-Cheruel, H.Vantilbeurgh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.16 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.190, 44.800, 73.990, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 21.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase. (pdb code 2ciq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase., PDB code: 2ciq:

Sodium binding site 1 out of 1 in 2ciq

Go back to Sodium Binding Sites List in 2ciq
Sodium binding site 1 out of 1 in the Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure-Based Functional Annotation: Yeast YMR099C Codes For A D- Hexose-6-Phosphate Mutarotase. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1290

b:21.1
occ:1.00
 O A:HOH2265 2.3 36.2 1.0
OE2 A:GLU252 2.4 28.3 1.0
O A:HOH2268 2.4 34.3 1.0
O A:ALA249 2.4 21.7 1.0
C A:ALA249 3.5 21.8 1.0
CD A:GLU252 3.5 27.1 1.0
CG A:GLU252 4.1 23.9 1.0
CA A:ALA249 4.1 20.8 1.0
NZ A:LYS254 4.3 20.3 1.0
OE1 A:GLU252 4.5 28.0 1.0
N A:ASP250 4.6 20.3 1.0
CE A:LYS254 4.6 20.8 1.0
O A:MET248 4.8 20.6 1.0
O A:PHE251 4.8 20.9 1.0
CB A:ALA249 4.8 21.5 1.0
O A:HOH2269 4.8 33.7 1.0
CA A:ASP250 4.9 20.8 1.0

Reference:

M.Graille, J.P.Baltaze, N.Leulliot, D.Liger, S.Quevillon-Cheruel, H.Van Tilbeurgh. Structure-Based Functional Annotation: Yeast YMR099C Codes For A D-Hexose-6-Phosphate Mutarotase. J. Biol. Chem. V. 281 30175 2006.
ISSN: ISSN 0021-9258
PubMed: 16857670
DOI: 10.1074/JBC.M604443200
Page generated: Sun Aug 17 10:17:14 2025

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