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Sodium in PDB 2c8k: Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site

Enzymatic activity of Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site

All present enzymatic activity of Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site:
3.6.3.8;

Protein crystallography data

The structure of Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site, PDB code: 2c8k was solved by A.M.Jensen, T.L.Sorensen, C.Olesen, J.V.Moller, P.Nissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.95 / 2.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.340, 71.340, 587.990, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 30.8

Other elements in 2c8k:

The structure of Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site (pdb code 2c8k). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site, PDB code: 2c8k:

Sodium binding site 1 out of 1 in 2c8k

Go back to Sodium Binding Sites List in 2c8k
Sodium binding site 1 out of 1 in the Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of (Sr) Calcium-Atpase E2(Tg) with Partially Occupied Amppcp Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1998

b:41.6
occ:1.00
 OE2 A:GLU732 2.4 60.0 1.0
O A:ALA714 2.5 42.1 1.0
O A:LEU711 2.7 39.3 1.0
O A:LYS712 2.8 42.0 1.0
CD A:GLU732 3.0 55.6 1.0
OE1 A:GLU732 3.1 58.7 1.0
C A:LYS712 3.4 42.1 1.0
CA A:LYS712 3.6 42.0 1.0
C A:ALA714 3.7 43.0 1.0
N A:GLY717 3.8 35.7 1.0
C A:LEU711 3.8 37.4 1.0
N A:ALA714 4.2 47.9 1.0
N A:LYS712 4.2 40.0 1.0
O A:GLU715 4.2 37.4 1.0
C A:GLU715 4.2 35.2 1.0
N A:LYS713 4.4 44.8 1.0
O A:ALA730 4.4 44.4 1.0
CG A:GLU732 4.4 52.7 1.0
CA A:ALA714 4.4 45.2 1.0
CA A:GLY717 4.4 34.0 1.0
C A:LYS713 4.5 49.2 1.0
N A:ILE716 4.5 36.4 1.0
N A:GLU715 4.6 40.3 1.0
C A:ILE716 4.7 36.7 1.0
CA A:ILE716 4.7 37.1 1.0
CA A:GLU715 4.7 37.7 1.0
CB A:ALA714 4.8 47.5 1.0
O A:LYS713 4.9 51.9 1.0
CA A:LYS713 4.9 49.4 1.0
CB A:LYS712 5.0 43.9 1.0

Reference:

A.M.Jensen, T.L.Sorensen, C.Olesen, J.V.Moller, P.Nissen. Modulatory and Catalytic Modes of Atp Binding By the Calcium Pump Embo J. V. 25 2305 2006.
ISSN: ISSN 0261-4189
PubMed: 16710301
DOI: 10.1038/SJ.EMBOJ.7601135
Page generated: Mon Oct 7 02:05:05 2024

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