Sodium in PDB 1zey: Cgg A-Dna

The structure of Cgg A-Dna, PDB code: 1zey was solved by F.A.Hays, A.T.Teegarden, Z.J.R.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.16 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	24.493, 44.315, 47.711, 90.00, 90.00, 90.00
R / Rfree (%)	26.6 / 32.7

The binding sites of Sodium atom in the Cgg A-Dna (pdb code 1zey). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cgg A-Dna, PDB code: 1zey:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cgg A-Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cgg A-Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na40 b:2.4 occ:1.00 OP1 A:DC3 3.1 2.0 1.0 O A:HOH22 3.5 4.3 1.0 O A:HOH30 3.6 2.0 1.0 P A:DC3 4.5 3.5 1.0

Sodium binding site 2 out of 2 in the Cgg A-Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cgg A-Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Na21 b:2.0 occ:1.00 O B:HOH63 1.9 3.8 1.0 O B:HOH29 2.8 3.2 1.0 O B:HOH73 3.1 3.8 1.0 O B:HOH90 3.2 9.0 1.0 O B:HOH67 3.9 3.0 1.0 OP2 B:DG19 4.0 3.7 1.0 O B:HOH98 4.6 11.3 1.0

F.A.Hays, A.Teegarden, Z.J.Jones, M.Harms, D.Raup, J.Watson, E.Cavaliere, P.S.Ho. How Sequence Defines Structure: A Crystallographic Map of Dna Structure and Conformation. Proc.Natl.Acad.Sci.Usa V. 102 7157 2005.
ISSN: ISSN 0027-8424
PubMed: 15870206
DOI: 10.1073/PNAS.0409455102