Sodium in PDB 1zel: Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis

The structure of Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis, PDB code: 1zel was solved by R.Janowski, S.Panjikar, J.Mueller-Dieckmann, M.S.Weiss, Tb Structuralgenomics Consortium (Tbsgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.93
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	87.419, 180.653, 35.112, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 22.5

The binding sites of Sodium atom in the Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis (pdb code 1zel). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis, PDB code: 1zel:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:22.4 occ:1.00 OD1 A:ASP206 2.2 22.5 1.0 OD1 A:ASP210 2.3 18.6 1.0 OD2 A:ASP210 2.5 18.1 1.0 O A:ASP206 2.6 21.2 1.0 CG A:ASP210 2.6 22.0 1.0 NH1 A:ARG164 2.7 24.9 1.0 CZ A:ARG164 3.1 28.7 1.0 C A:ASP206 3.4 20.7 1.0 CG A:ASP206 3.5 26.2 1.0 NH2 A:ARG164 3.5 28.1 1.0 CA A:ASP206 3.8 20.9 1.0 NE A:ARG164 3.8 20.9 1.0 CB A:ASP210 4.0 20.5 1.0 CB A:ASP206 4.2 20.4 1.0 CB A:ALA209 4.2 20.9 1.0 N A:ASP210 4.3 21.2 1.0 O A:HOH777 4.3 35.7 1.0 CD A:ARG164 4.3 17.4 1.0 OD2 A:ASP206 4.4 28.5 1.0 CE2 A:TYR112 4.5 16.9 1.0 OH A:TYR112 4.6 19.4 1.0 CA A:ASP210 4.6 21.6 1.0 N A:LEU207 4.6 21.0 1.0 C A:ALA209 4.6 21.4 1.0 CA A:ALA209 4.9 21.3 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of RV2827C Protein From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:21.1 occ:1.00 OD1 B:ASP206 2.3 17.5 1.0 OD1 B:ASP210 2.4 16.2 1.0 O B:ASP206 2.4 18.2 1.0 OD2 B:ASP210 2.5 15.9 1.0 CG B:ASP210 2.7 19.2 1.0 NH1 B:ARG164 2.9 20.0 1.0 C B:ASP206 3.3 17.0 1.0 CZ B:ARG164 3.3 20.3 1.0 CG B:ASP206 3.4 19.3 1.0 CA B:ASP206 3.6 16.4 1.0 NH2 B:ARG164 3.7 22.6 1.0 NE B:ARG164 4.0 19.8 1.0 CB B:ASP210 4.0 16.8 1.0 O B:HOH724 4.1 29.3 1.0 CB B:ASP206 4.1 16.5 1.0 CB B:ALA209 4.2 19.8 1.0 N B:ASP210 4.2 18.7 1.0 CE2 B:TYR112 4.4 15.7 1.0 N B:LEU207 4.4 16.8 1.0 CD B:ARG164 4.5 19.4 1.0 OD2 B:ASP206 4.5 20.8 1.0 C B:ALA209 4.6 19.9 1.0 CA B:ASP210 4.6 17.6 1.0 OH B:TYR112 4.7 20.8 1.0 CA B:ALA209 4.8 20.3 1.0 N B:ASP206 4.9 15.8 1.0 CA B:LEU207 5.0 17.0 1.0

R.Janowski, S.Panjikar, A.N.Eddine, S.H.Kaufmann, M.S.Weiss. Structural Analysis Reveals Dna Binding Properties of RV2827C, A Hypothetical Protein From Mycobacterium Tuberculosis. J Struct Funct Genomics V. 10 137 2009.
ISSN: ISSN 1345-711X
PubMed: 19184528
DOI: 10.1007/S10969-009-9060-4