Sodium in PDB 1y63: Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin

The structure of Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin, PDB code: 1y63 was solved by M.A.Robien, W.G.J.Hol, Structural Genomics Of Pathogenic Protozoaconsortium (Sgpp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.00 / 1.70
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	107.116, 107.116, 35.216, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 19.6

The structure of Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin also contains other interesting chemical elements:

Bromine	(Br)	5 atoms
Manganese	(Mn)	8 atoms

The binding sites of Sodium atom in the Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin (pdb code 1y63). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin, PDB code: 1y63:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:28.5 occ:0.50 O A:HOH1107 2.0 37.8 1.0 OE2 A:GLU94 2.4 46.0 1.0 O A:HOH1157 2.8 56.4 1.0 CD A:GLU94 3.4 40.9 1.0 O A:HOH1042 3.6 24.8 1.0 OE1 A:GLU94 3.8 45.3 1.0 O A:HOH1022 4.5 20.3 0.5 CG A:GLU94 4.6 35.8 1.0 O A:HOH1121 4.6 40.7 1.0 OD2 A:ASP146 5.0 41.7 1.0 CB A:ASP146 5.0 26.9 1.0

Sodium binding site 2 out of 2 in the Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Initial Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:46.0 occ:1.00 OD1 A:ASP146 2.9 38.2 1.0 OD2 A:ASP146 3.1 41.7 1.0 CG A:ASP146 3.3 35.6 1.0 O A:HOH1157 4.2 56.4 1.0 O A:HOH1065 4.4 30.6 1.0 O A:HOH1069 4.6 31.5 1.0 CB A:ASP146 4.6 26.9 1.0

M.A.Robien, W.G.J.Hol, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp). Crystal Structural Analysis of A Probable Kinase From Leishmania Major Friedlin To Be Published.