Atomistry » Sodium » PDB 1t4b-1u8r » 1thm
Atomistry »
  Sodium »
    PDB 1t4b-1u8r »
      1thm »

Sodium in PDB 1thm: Crystal Structure of Thermitase at 1.4 Angstroms Resolution

Enzymatic activity of Crystal Structure of Thermitase at 1.4 Angstroms Resolution

All present enzymatic activity of Crystal Structure of Thermitase at 1.4 Angstroms Resolution:
3.4.21.66;

Protein crystallography data

The structure of Crystal Structure of Thermitase at 1.4 Angstroms Resolution, PDB code: 1thm was solved by A.V.Teplyakov, I.P.Kuranova, E.H.Harutyunyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 1.37
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 72.950, 64.050, 47.550, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 1thm:

The structure of Crystal Structure of Thermitase at 1.4 Angstroms Resolution also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Thermitase at 1.4 Angstroms Resolution (pdb code 1thm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Thermitase at 1.4 Angstroms Resolution, PDB code: 1thm:

Sodium binding site 1 out of 1 in 1thm

Go back to Sodium Binding Sites List in 1thm
Sodium binding site 1 out of 1 in the Crystal Structure of Thermitase at 1.4 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Thermitase at 1.4 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:23.1
occ:1.00
O A:ALA178 2.8 13.8 1.0
O A:ALA173 2.8 13.7 1.0
O A:HOH420 2.9 37.0 1.0
O A:HOH335 2.9 23.9 1.0
O A:TYR175 3.0 12.4 1.0
OD2 A:ASP201 3.0 12.3 1.0
C A:ALA178 3.8 12.0 1.0
C A:TYR175 4.0 14.0 1.0
CG A:ASP201 4.0 12.8 1.0
C A:ALA173 4.1 9.7 1.0
N A:ALA180 4.1 11.0 1.0
CB A:ALA180 4.1 12.4 1.0
O A:TRP199 4.1 13.7 1.0
C A:TYR174 4.1 13.3 1.0
O A:TYR174 4.1 16.3 1.0
OD1 A:ASP201 4.3 14.5 1.0
O A:SER176 4.4 15.4 1.0
NH2 A:ARG249 4.4 14.4 1.0
O A:HOH364 4.4 29.3 1.0
N A:TYR175 4.5 9.9 1.0
CA A:TYR174 4.5 11.1 1.0
CA A:SER176 4.6 14.2 1.0
N A:ALA178 4.6 12.5 1.0
CB A:ALA178 4.6 14.4 1.0
CA A:ALA178 4.7 11.5 1.0
C A:SER176 4.7 15.0 1.0
N A:SER176 4.7 12.4 1.0
N A:ILE179 4.7 10.3 1.0
CA A:ILE179 4.7 10.5 1.0
CA A:ALA180 4.7 9.3 1.0
C A:ILE179 4.8 12.6 1.0
N A:TYR174 4.8 10.4 1.0
CA A:TYR175 4.9 11.7 1.0

Reference:

A.V.Teplyakov, I.P.Kuranova, E.H.Harutyunyan, B.K.Vainshtein, C.Frommel, W.E.Hohne, K.S.Wilson. Crystal Structure of Thermitase at 1.4 A Resolution. J.Mol.Biol. V. 214 261 1990.
ISSN: ISSN 0022-2836
PubMed: 2196375
DOI: 10.1016/0022-2836(90)90160-N
Page generated: Sun Oct 6 22:39:35 2024

Last articles

Cl in 5RY8
Cl in 5RY2
Cl in 5RY0
Cl in 5RXW
Cl in 5RXO
Cl in 5RXU
Cl in 5RXV
Cl in 5RXG
Cl in 5RXE
Cl in 5RX4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy