Atomistry » Sodium » PDB 1qtk-1s3x » 1rwf
Atomistry »
  Sodium »
    PDB 1qtk-1s3x »
      1rwf »

Sodium in PDB 1rwf: Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide

Enzymatic activity of Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide

All present enzymatic activity of Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide:
4.2.2.5;

Protein crystallography data

The structure of Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide, PDB code: 1rwf was solved by V.V.Lunin, Y.Li, H.Miyazono, M.Kyogashima, A.W.Bell, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.12 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.889, 86.914, 81.504, 90.00, 107.00, 90.00
R / Rfree (%) 13.8 / 17.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide (pdb code 1rwf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide, PDB code: 1rwf:

Sodium binding site 1 out of 1 in 1rwf

Go back to Sodium Binding Sites List in 1rwf
Sodium binding site 1 out of 1 in the Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase in Complex with Chondroitin Tetrasaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na900

b:21.0
occ:1.00
 O A:HOH1320 2.1 25.5 1.0
O A:HIS233 2.2 14.1 1.0
O A:TRP465 2.2 17.3 1.0
O A:HOH1059 2.5 15.0 1.0
O A:HOH1967 2.5 47.1 1.0
OG1 A:THR235 2.8 13.1 1.0
C A:TRP465 3.3 15.3 1.0
O A:GLY466 3.4 16.6 1.0
C A:HIS233 3.4 13.0 1.0
C A:GLY466 3.5 16.0 1.0
CA A:GLY466 3.5 15.1 1.0
CB A:HIS233 3.8 11.9 1.0
N A:GLY466 3.8 14.5 1.0
N A:THR235 3.9 10.5 1.0
O A:HOH1860 4.1 40.8 1.0
CB A:THR235 4.1 12.6 1.0
CA A:HIS233 4.2 12.1 1.0
O A:HOH1801 4.2 39.8 1.0
N A:ALA467 4.3 16.7 1.0
CA A:TRP465 4.4 14.6 1.0
CB A:SER234 4.4 15.5 1.0
O6 A:ASG812 4.5 31.3 0.6
N A:SER234 4.5 12.7 1.0
CG2 A:THR235 4.6 16.2 1.0
CA A:THR235 4.6 11.7 1.0
O A:HOH1958 4.6 48.4 1.0
CB A:TRP465 4.7 15.0 1.0
OE2 A:GLU407 4.8 13.2 1.0
OG1 A:THR236 4.8 11.7 1.0
CA A:SER234 4.8 13.3 1.0
C A:SER234 4.8 12.8 1.0
CA A:ALA467 4.9 17.4 1.0

Reference:

V.V.Lunin, Y.Li, R.J.Linhardt, H.Miyazono, M.Kyogashima, T.Kaneko, A.W.Bell, M.Cygler. High-Resolution Crystal Structure of Arthrobacter Aurescens Chondroitin Ac Lyase: An Enzyme-Substrate Complex Defines the Catalytic Mechanism J.Mol.Biol. V. 337 367 2004.
ISSN: ISSN 0022-2836
PubMed: 15003453
DOI: 10.1016/J.JMB.2003.12.071
Page generated: Sun Oct 6 22:04:31 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy