Sodium in PDB 1pj7: Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid

Enzymatic activity of Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid

All present enzymatic activity of Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid:
1.5.3.10;

Protein crystallography data

The structure of Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid, PDB code: 1pj7 was solved by D.Leys, J.Basran, N.S.Scrutton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	20.00 / 2.10
*Space group*	C 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	70.621, 223.740, 119.371, 90.00, 90.00, 90.00
*R / R_free (%)*	15.9 / 22.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid (pdb code 1pj7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid, PDB code: 1pj7:

Sodium binding site 1 out of 1 in 1pj7

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Sodium Binding Sites List in 1pj7

Sodium binding site 1 out of 1 in the Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Dimethylglycine Oxidase of Arthrobacter Globiformis in Complex with Folinic Acid within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na2001 b:34.6 occ:1.00	O	A:HOH3360	2.2	49.4	1.0
	OD2	A:ASP257	2.4	34.8	1.0
	O	A:VAL412	2.4	27.5	1.0
	O	A:HOH3084	2.4	39.3	1.0
	O	A:HOH3031	2.6	44.4	1.0
	O	A:HOH2932	2.8	28.4	1.0
	O	A:HOH3632	3.1	49.0	1.0
	CG	A:ASP257	3.3	31.5	1.0
	C	A:VAL412	3.5	30.0	1.0
	OD1	A:ASP257	3.6	34.6	1.0
	O	A:HOH3581	4.0	40.8	1.0
	CA	A:VAL412	4.0	29.0	1.0
	O	A:TYR272	4.2	28.0	1.0
	OD1	A:ASP416	4.2	33.3	1.0
	CG1	A:VAL412	4.5	30.1	1.0
	N	A:GLU413	4.6	28.4	1.0
	O	A:PHE411	4.6	30.1	1.0
	CB	A:ASP257	4.7	27.0	1.0
	CB	A:VAL412	4.9	31.7	1.0
	CA	A:GLU413	4.9	28.7	1.0

Reference:

D.Leys, J.Basran, N.S.Scrutton. Channelling and Formation of 'Active' Formaldehyde in Dimethylglycine Oxidase. Embo J. V. 22 4038 2003.
ISSN: ISSN 0261-4189
PubMed: 12912903
DOI: 10.1093/EMBOJ/CDG395

Page generated: Sun Oct 6 21:19:02 2024

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