Sodium in PDB 1orp: Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex

The structure of Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex, PDB code: 1orp was solved by J.C.Fromme, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.51 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.732, 106.516, 41.661, 90.00, 90.00, 90.00
R / Rfree (%)	24.1 / 26.2

The structure of Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Sodium atom in the Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex (pdb code 1orp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex, PDB code: 1orp:

Sodium binding site 1 out of 1 in the Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of A Trapped Endonuclease III-Dna Covalent Intermediate: Estranged-Adenine Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na224 b:50.5 occ:1.00 O A:MET113 2.3 45.3 1.0 O A:LEU115 2.4 46.1 1.0 OP1 C:DC21 2.5 43.5 1.0 O A:VAL118 2.5 42.8 1.0 O C:HOH34 2.9 53.0 1.0 C A:MET113 3.3 46.0 1.0 C A:LEU115 3.4 44.6 1.0 C A:VAL118 3.5 41.2 1.0 P C:DC21 3.6 47.8 1.0 N A:VAL118 3.6 42.2 1.0 O C:HOH35 3.7 60.2 1.0 OP2 C:DC21 3.8 43.6 1.0 C A:LYS114 3.8 47.0 1.0 CA A:VAL118 3.9 40.2 1.0 N A:LEU115 4.0 45.0 1.0 O A:LYS114 4.0 47.8 1.0 CA A:MET113 4.2 44.8 1.0 N A:LYS114 4.2 46.8 1.0 CB A:VAL118 4.2 40.0 1.0 CA A:LYS114 4.3 47.3 1.0 N A:PRO116 4.3 45.5 1.0 N A:GLY117 4.3 46.9 1.0 CA A:PRO116 4.3 46.5 1.0 CA A:LEU115 4.3 45.9 1.0 C A:PRO116 4.5 46.0 1.0 N A:GLY119 4.6 40.0 1.0 O3' C:DT20 4.6 48.6 1.0 O5' C:DC21 4.7 50.8 1.0 C A:GLY117 4.7 42.7 1.0 O A:LEU112 4.8 39.6 1.0 CB A:MET113 4.9 44.4 1.0

J.C.Fromme, G.L.Verdine. Structure of A Trapped Endonuclease III-Dna Covalent Intermediate Embo J. V. 22 3461 2003.
ISSN: ISSN 0261-4189
PubMed: 12840008
DOI: 10.1093/EMBOJ/CDG311