Sodium in PDB 1onw: Crystal Structure of Isoaspartyl Dipeptidase From E. Coli

The structure of Crystal Structure of Isoaspartyl Dipeptidase From E. Coli, PDB code: 1onw was solved by J.B.Thoden, R.Marti-Arbona, F.M.Raushel, H.M.Holden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.65
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	116.700, 116.700, 138.500, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The structure of Crystal Structure of Isoaspartyl Dipeptidase From E. Coli also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	4 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Crystal Structure of Isoaspartyl Dipeptidase From E. Coli (pdb code 1onw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Isoaspartyl Dipeptidase From E. Coli, PDB code: 1onw:

Sodium binding site 1 out of 1 in the Crystal Structure of Isoaspartyl Dipeptidase From E. Coli


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Isoaspartyl Dipeptidase From E. Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Na805 b:37.0 occ:1.00 O B:HOH1107 2.2 64.5 1.0 O A:HOH886 2.5 29.7 1.0 O B:GLY193 2.6 17.4 1.0 O B:HOH869 2.6 18.0 1.0 O B:HOH998 2.8 34.4 1.0 O B:HOH1052 2.9 50.5 1.0 O2 B:EDO807 3.4 32.9 1.0 C B:GLY193 3.6 16.6 1.0 O B:HOH989 3.9 21.4 1.0 O B:HOH887 4.0 23.2 1.0 CA B:GLY193 4.1 12.8 1.0 O B:HOH870 4.2 19.2 1.0 OG1 B:THR343 4.3 33.1 1.0 O1 B:EDO807 4.3 29.8 1.0 C2 B:EDO807 4.6 28.4 1.0 O A:HOH838 4.7 17.6 1.0 ND2 B:ASN341 4.7 16.5 0.5 N B:LYS194 4.7 13.3 1.0 O B:HOH1000 4.8 26.5 1.0 O B:ASN341 4.9 17.9 1.0

J.B.Thoden, R.Marti-Arbona, F.M.Raushel, H.M.Holden. High Resolution X-Ray Structure of Isoaspartyl Dipeptidase From Escherichia Coli Biochemistry V. 42 4874 2003.
ISSN: ISSN 0006-2960
PubMed: 12718528
DOI: 10.1021/BI034233P