Sodium in PDB 1n5c: Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg

The structure of Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg, PDB code: 1n5c was solved by E.Freisinger, A.Fernandes, A.P.Grollman, C.F.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.79
Space group	P 32 1 2
Cell size a, b, c (Å), α, β, γ (°)	26.723, 26.723, 101.544, 90.00, 90.00, 120.00
R / Rfree (%)	16.1 / 21.9

The binding sites of Sodium atom in the Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg (pdb code 1n5c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg, PDB code: 1n5c:

Sodium binding site 1 out of 1 in the Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure Analysis of the B-Dna Dodecamer Cgcgaatt(Ethenoc)Gcg within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1101 b:19.7 occ:0.50 N3 A:DC13 2.3 61.8 1.0 O2 A:DC13 2.4 39.0 1.0 C2 A:DC13 2.7 59.5 1.0 C4 A:DC13 3.4 65.5 1.0 N4 A:DC13 3.8 75.9 1.0 N1 A:DC13 4.1 54.1 1.0 C5 A:DC13 4.7 66.6 1.0 O A:HOH1039 4.8 58.6 1.0 O A:HOH1042 4.8 55.0 0.2 C6 A:DC13 4.8 63.1 1.0

E.Freisinger, A.Fernandes, A.P.Grollman, C.F.Kisker. Crystallographic Characterization of An Exocyclic Dna Adduct: 3,N4-Etheno-2'-Deoxycytidine in the Dodecamer 5'-Cgcgaatt(Ethenoc)Gcg-3' J.Mol.Biol. V. 329 685 2003.
ISSN: ISSN 0022-2836
PubMed: 12787670
DOI: 10.1016/S0022-2836(03)00445-5